View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0074_low_4 (Length: 329)
Name: NF0074_low_4
Description: NF0074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0074_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 37 - 315
Target Start/End: Complemental strand, 8677350 - 8677071
Alignment:
| Q |
37 |
ttattttatctcattttcggatgcaaatgatgtcttttttgtaaactttaattcagatgttcagtagttatcatctgtggttgcattagattgacttgtt |
136 |
Q |
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| T |
8677350 |
ttattttatctcattttcggatgcaaatgatgtcttttttgtaaactttaattaagacgttcagtagttatcatctatggttgcattggattgacttgtt |
8677251 |
T |
|
| Q |
137 |
atcttgttggcatggtttggaaaaagacaatgattattgcttaactatttcattcttcttggtccttaactgctcattgaaaaaggttttggtaagggtg |
236 |
Q |
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| T |
8677250 |
atcttgttggcattgtttggaaaaagacaatgattattgctcaactatttcattcttcttggtccttaactgctcattgaaaaaggttttgataagggtg |
8677151 |
T |
|
| Q |
237 |
acatataaatgagccatcaatctgaggagtttcgttcaaattca-ttttgatttaaaacttttaacaattgaatttcaat |
315 |
Q |
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| T |
8677150 |
acatataaatgagccatcaatctgaggagcttcgatcaaattcatttttgatttaaaacttttaacaattgaatttcaat |
8677071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 8643377 - 8643229
Alignment:
| Q |
43 |
tatctcattttcggatgcaaatgatgtcttttttgtaaactttaattcagatgttcagtagttatcatctgtggttgcattagattgacttgttatcttg |
142 |
Q |
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| T |
8643377 |
tatctcattttaggatgcaaatgatgtcttttttgtaaactttaattcagatgttcagtaattatcatctatggttttactatattgacttgttatcttg |
8643278 |
T |
|
| Q |
143 |
ttggc-atggtttggaaaaagacaatgattattgcttaactatttcatt |
190 |
Q |
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| T |
8643277 |
ttggcaatggtttagaaaaagacaatgattattgctaaactatttcatt |
8643229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 8635951 - 8635801
Alignment:
| Q |
43 |
tatctcattttcggatgcaaatgatgtctttttt-gtaaactttaattcagatgttcagtagttatcatctgtggttgcattagattgacttgttatctt |
141 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| | ||||||||||||||||||| |
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| T |
8635951 |
tatctcattttaggatgcaaatgatgtctttttttgtaaactttaattaagatgttcagtagttatcatctatggttttactagattgacttgttatctt |
8635852 |
T |
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| Q |
142 |
gttggc-atggtttggaaaaagacaatgattattgcttaactatttcattc |
191 |
Q |
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|||||| ||||||| |||||||||||||||| ||||| ||||||||||||| |
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| T |
8635851 |
gttggcaatggtttagaaaaagacaatgattgttgctcaactatttcattc |
8635801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 193 - 312
Target Start/End: Complemental strand, 8643172 - 8643056
Alignment:
| Q |
193 |
tcttggtccttaactgctcattgaaaaaggttttggtaagggtgacatataaatgagccatcaatctgaggagtttcgttcaaattcattttgatttaaa |
292 |
Q |
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||||||| ||||||||||||||||||| |||||| ||||||||| |||||| |||||||||||| ||||||| |||| || ||| |||||||||||||| |
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| T |
8643172 |
tcttggttcttaactgctcattgaaaa-ggtttttgtaagggtggaatataa-tgagccatcaatttgaggagcttcgatcgaat-cattttgatttaaa |
8643076 |
T |
|
| Q |
293 |
acttttaacaattgaatttc |
312 |
Q |
| |
|
||||||| |||||||||||| |
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| T |
8643075 |
acttttaccaattgaatttc |
8643056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 8545365 - 8545409
Alignment:
| Q |
44 |
atctcattttcggatgcaaatgatgtcttttttgtaaactttaat |
88 |
Q |
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| T |
8545365 |
atctcattttaggatgcaaatgatgtcttttttgtaaactttaat |
8545409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 8640281 - 8640227
Alignment:
| Q |
43 |
tatctcattttcggatgcaaatgatgtcttttttgtaaactttaattcagatgttc |
98 |
Q |
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||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||| |
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| T |
8640281 |
tatctcattttaggatgcaaacaatgtcttttt-gtaagctttaattcagatgttc |
8640227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 1601349 - 1601392
Alignment:
| Q |
55 |
ggatgcaaatgatgtcttttttgtaaactttaattcagatgttca |
99 |
Q |
| |
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| T |
1601349 |
ggatgcaaatgatgtc-tttttgtaaactttaatctagatgttca |
1601392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 8527719 - 8527663
Alignment:
| Q |
44 |
atctcattttcggatgcaaatgatgtctt-ttttgtaaactttaattcagatgttca |
99 |
Q |
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|
|||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||| |
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| T |
8527719 |
atctcattttaagatgcaaatgatgtctttttttgtaaaatttaatctagatgttca |
8527663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 9075532 - 9075576
Alignment:
| Q |
44 |
atctcattttcggatgcaaatgatgtcttttttgtaaactttaat |
88 |
Q |
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| T |
9075532 |
atctcgttttaggatgcaaatgatggcttttttgttaactttaat |
9075576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 44438680 - 44438721
Alignment:
| Q |
44 |
atctcattttcggatgcaaatgatgtcttttttgtaaacttt |
85 |
Q |
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|||||||||| ||| |||||||||||||||||| |||||||| |
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| T |
44438680 |
atctcattttaggaggcaaatgatgtcttttttctaaacttt |
44438721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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