View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0075-INSERTION-10 (Length: 668)

Name: NF0075-INSERTION-10
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0075-INSERTION-10
NF0075-INSERTION-10
[»] scaffold0110 (2 HSPs)
scaffold0110 (342-668)||(36184-36510)
scaffold0110 (8-309)||(36530-36831)
[»] chr3 (2 HSPs)
chr3 (125-196)||(43239803-43239876)
chr3 (128-178)||(51038892-51038942)
[»] chr1 (5 HSPs)
chr1 (112-213)||(47689070-47689172)
chr1 (125-173)||(43182303-43182351)
chr1 (168-213)||(40089517-40089562)
chr1 (155-219)||(7274456-7274520)
chr1 (116-173)||(38503723-38503781)
[»] chr4 (2 HSPs)
chr4 (144-207)||(53726456-53726520)
chr4 (167-210)||(33697071-33697113)
[»] chr5 (2 HSPs)
chr5 (167-219)||(33137744-33137796)
chr5 (126-178)||(33542147-33542199)
[»] chr7 (2 HSPs)
chr7 (130-173)||(260183-260226)
chr7 (83-172)||(13825652-13825743)
[»] chr2 (1 HSPs)
chr2 (124-173)||(8912393-8912444)


Alignment Details
Target: scaffold0110 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 342 - 668
Target Start/End: Complemental strand, 36510 - 36184
Alignment:
Q  342 agcttattcatgtagtatggagctttgtcttgattctaatagtgaaaggaaattgcggtatattgaatacttcatgcatagagtgaatttgcttcggtac 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36510 agcttattcatgtagtatggagctttgtcttgattctaatagtgaaaggaaattgcggtatattgaatacttcatgcatagagtgaatttgcttcggtac 36411  T
Q  442 tataatgtaacaccagttgttgtttttgatggcggcaatgttccttgcaaagcagcaactgagaaagagaggaacaagtatgcttttatttatttgagct 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36410 tataatgtaacaccagttgttgtttttgatggcggcaatgttccttgcaaagcagcaactgagaaagagaggaacaagtatgcttttatttatttgagct 36311  T
Q  542 tttaaggatttgaatcaatttcttcaatcttttgtttgttccgtttttcagtttatgatgcttgtttgatttggttgtttagaaaaaggaatactaatcg 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36310 tttaaggatttgaatcaatttcttcaatcttttgtttgttccgtttttcagtttatgatgcttgtttgatttggttgtttagaaaaaggaatactaatcg 36211  T
Q  642 tgagttggcaatggctaagctcaaaga 668  Q
    |||||||||||||||||||||||||||    
T  36210 tgagttggcaatggctaagctcaaaga 36184  T

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Target: scaffold0110; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 36831 - 36530
Alignment:
Q  8 cttgccccttttttaggactatgagccattctcaacatgatttaatcaaataattttgctgaaaaatttctgaagattttgataaagaaagttgtgtaat 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36831 cttgccccttttttaggcctatgagccattctcaacatgatttaatcaaataattttgctgaaaaatttctgaagattttgataaagaaagttgcgtaat 36732  T
Q  108 gattatctctctgatacatattacaattcttgatagaactcatacatgagagaaaagtatagaaaaatataatgattaatgagagaattgttgtttacat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36731 gattatctctctgatacatattacaattcttgatagaactcatacatgagagaaaagtatagaaaaatataatgattaatgagagaattgttgtttacat 36632  T
Q  208 gaagggatacaaggatgtttatagtcaattagaataactaactagtctaacttaactcacctgtgtaactaattatcgtaacttgctattatatctaata 307  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36631 gaagggatacaaggaagtttatagtcaattagaataactaactagtctaacttaactcacctgtgtaactaattatcgtaacttgctattatatctaata 36532  T
Q  308 ca 309  Q
    ||    
T  36531 ca 36530  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 43239876 - 43239803
Alignment:
Q  125 atattacaattcttgatagaactcatacatgagagaaaagtatagaaaaatat--aatgattaatgagagaatt 196  Q
    ||||||||||||||||||||||||| | ||||||| ||| |||||||||||||  | |||||||||||||||||    
T  43239876 atattacaattcttgatagaactcacagatgagaggaaattatagaaaaatatacattgattaatgagagaatt 43239803  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 51038942 - 51038892
Alignment:
Q  128 ttacaattcttgatagaactcatacatgagagaaaagtatagaaaaatata 178  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  51038942 ttacaattcttgatggaactcatagatgagagaaaagcatagaaaaatata 51038892  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 47689070 - 47689172
Alignment:
Q  112 atctctctgata-catattacaattcttgatagaactcatacatgagagaaaagtatagaaaaatataatgattaatgagagaattgttgtttacatgaa 210  Q
    |||||||| ||| |||||||||||||| ||||||| | ||   ||||||||||||||| |||||| || |||||||||||| ||| |||| |||||||||    
T  47689070 atctctctaatatcatattacaattctagatagaatttatcgttgagagaaaagtataaaaaaatttattgattaatgagaaaatagttgattacatgaa 47689169  T
Q  211 ggg 213  Q
    |||    
T  47689170 ggg 47689172  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 43182351 - 43182303
Alignment:
Q  125 atattacaattcttgatagaactcatacatgagagaaaagtatagaaaa 173  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  43182351 atattacaattcttgatagaactcataattgagagaaaagtatagaaaa 43182303  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 40089517 - 40089562
Alignment:
Q  168 agaaaaatataatgattaatgagagaattgttgtttacatgaaggg 213  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||    
T  40089517 agaaaaatatattgattaattagagaattgttgtttatatgaaggg 40089562  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 7274456 - 7274520
Alignment:
Q  155 gagagaaaagtatagaaaaatataatgattaatgagagaattgttgtttacatgaagggatacaa 219  Q
    |||| |||| ||| |||| ||||| ||||||| |||| ||||||||||||||||||| |||||||    
T  7274456 gagaaaaaaatatcgaaacatatactgattaacgagataattgttgtttacatgaagcgatacaa 7274520  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 38503723 - 38503781
Alignment:
Q  116 ctctgatac-atattacaattcttgatagaactcatacatgagagaaaagtatagaaaa 173  Q
    ||||||||| |||||| ||||||||||| ||||||||  |||||||||||||| |||||    
T  38503723 ctctgataccatattataattcttgatataactcataattgagagaaaagtatcgaaaa 38503781  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 53726456 - 53726520
Alignment:
Q  144 aactcatacatgagagaaaagt-atagaaaaatataatgattaatgagagaattgttgtttacat 207  Q
    |||||||| ||||||||||| | |||||||||| || ||||||||||||||||||||| ||||||    
T  53726456 aactcatagatgagagaaaaattatagaaaaatttattgattaatgagagaattgttgattacat 53726520  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 33697071 - 33697113
Alignment:
Q  167 tagaaaaatataatgattaatgagagaattgttgtttacatgaa 210  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  33697071 tagaaaaatata-tgattaatgagagaattgttgattacatgaa 33697113  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 33137744 - 33137796
Alignment:
Q  167 tagaaaaatataatgattaatgagagaattgttgtttacatgaagggatacaa 219  Q
    |||||||||||| |||||||||||| || ||||| |||||||||| |||||||    
T  33137744 tagaaaaatatattgattaatgagataactgttgattacatgaagagatacaa 33137796  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 33542147 - 33542199
Alignment:
Q  126 tattacaattcttgatagaactcatacatgagagaaaagtatagaaaaatata 178  Q
    |||||||| ||||||||||||| ||| || |||||||| |||||||| |||||    
T  33542147 tattacaagtcttgatagaactaatatataagagaaaactatagaaagatata 33542199  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 260226 - 260183
Alignment:
Q  130 acaattcttgatagaactcatacatgagagaaaagtatagaaaa 173  Q
    ||||||||||||||||||||||  |||||||||| |||||||||    
T  260226 acaattcttgatagaactcataattgagagaaaaatatagaaaa 260183  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 13825743 - 13825652
Alignment:
Q  83 attttgataaagaaagttgtgtaatgattat-ctctctgatac-atattacaattcttgatagaactcatacatgagagaaaagtatagaaa 172  Q
    |||||||||||||| |||| | ||| ||||| |||||| |||| ||||||||  | |||||||||||||||   ||||||||||||||||||    
T  13825743 attttgataaagaatgttgcggaataattattctctctaataccatattacatattttgatagaactcatagtagagagaaaagtatagaaa 13825652  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 8912393 - 8912444
Alignment:
Q  124 catattacaattcttgata--gaactcatacatgagagaaaagtatagaaaa 173  Q
    |||||||||||||||||||  |||||||||  |||||||||| |||||||||    
T  8912393 catattacaattcttgatatagaactcataattgagagaaaaatatagaaaa 8912444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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