View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0075-INSERTION-13 (Length: 744)
Name: NF0075-INSERTION-13
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-13 |
 | |
|
| [»] scaffold0048 (3 HSPs) |
| | |
|
| [»] scaffold0185 (1 HSPs) |
| | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
|
| [»] scaffold0713 (1 HSPs) |
| | |
|
| [»] scaffold0764 (1 HSPs) |
| | |
|
| [»] scaffold0313 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0048 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 8 - 743
Target Start/End: Complemental strand, 44364 - 43625
Alignment:
| Q |
8 |
caaagttagagagaaggccacttaggtgctccttgttagagacaggttgaaggattatgtgacttttatnnnnnnnnn--tattttagaaagagagatca |
105 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44364 |
caaagttagagagaagggcacttaggtgctccttgttagagacaggttgaaggattatgtgacttttataaaaaaaaaaatattttagaaagagagatca |
44265 |
T |
|
| Q |
106 |
gaaaaaagaatcggctttttcatagatttttattttcgatatcataaaggtgatggagagaacgagccacgaaggactttatgtattttaaattatgtgg |
205 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44264 |
gaaaaaagaatcgactttttcatagatttttattttcggtatcacaaaggtgatggagagaacgagccacgaaggactttatttattttaaattatgtgg |
44165 |
T |
|
| Q |
206 |
caatgaattatcaaggtgagtatgaattgattatatttgaaggtctatcataaagttgattttctccaaactgtaagctttatttggattacacaaatca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44164 |
caatgaattatcaaggtgagtatgaattgattatacttggaggtctatcataaagttgattttctccaaactgtaaggtttatttggattacacaaatca |
44065 |
T |
|
| Q |
306 |
actataaagattcctaaaatttcagatagtgtgtaacagttatctcttatcttttcaaagataattttctcctttcattttttattgtaagattcattca |
405 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| || | ||||||||||| |||||||||| |
|
|
| T |
44064 |
actataaagattcctaaaatctgagatagtgtgtaacagatatctcttatcttttcaaagataattttctcgttcctttttttattgtctgattcattca |
43965 |
T |
|
| Q |
406 |
cacttccaattcatttgtaagataaaattcacagttagctttaagggtattaaagtgtaggttaattagaaagttgaaacgtattgtgtgacttagcaac |
505 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43964 |
cacttccaattcatttgtaagataaaaatcacaattagctttaagggtattaaagtgtaggttgattagaaagttgaaacgtattgtgtgacctagcaac |
43865 |
T |
|
| Q |
506 |
gaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggttgcctcaaacat |
605 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||| ||| |
|
|
| T |
43864 |
gaaagttgtaag-ctgctaaggcttaaagaatacaggttgtaattgttccaagggaacaaatttgtacgatgtaggatttgataaggttgtctcaagcat |
43766 |
T |
|
| Q |
606 |
cgtagtgaaaaatctcaccta---aggtcgagactcaagtagcatacatcaggtgaaccaggataannnnnnngtgttccattcttctatcccttaactc |
702 |
Q |
| |
|
|||| || ||||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43765 |
cgtaatggaaaatcttacctaattaggtcgagactcaagtagcctacattgggtgaaccaggataatttttttgtgttccattcttctatcccttaactc |
43666 |
T |
|
| Q |
703 |
ttcacttacaacattcacatcacacacaaagttatttaact |
743 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43665 |
ttcacttacaacattcacatcacacacaaagttatttaact |
43625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 86172 - 86378
Alignment:
| Q |
18 |
gagaaggccacttaggtgctccttgttagagacaggttgaaggattatgtgacttttatnnnnnnnnntattttagaaagagagatcagaaaaaagaatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| |||||||||| | |
|
|
| T |
86172 |
gagaaggccacttaggtgctccttgttagagacaggttgaaggattatgtgacttttatatattttttctttttagaaagtgggattagaaaaaagattg |
86271 |
T |
|
| Q |
118 |
ggctttttcatagatttttattttcgatatcataaaggtgatggagagaacgagccacgaaggactttatgtattttaaattatgtggcaatgaattatc |
217 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
86272 |
ggcttttccatagatttttattttcaatatcataaaggtgatggggagaacgagccacgaaggacctaatgtattttaagttatgtggcaatgaattatc |
86371 |
T |
|
| Q |
218 |
aaggtga |
224 |
Q |
| |
|
||||||| |
|
|
| T |
86372 |
aaggtga |
86378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 59693 - 59494
Alignment:
| Q |
15 |
agagagaaggccacttaggtgctccttgttagagacaggttgaaggattatgtgacttttatnnnnnnnnntattttagaaagagagatcagaaaaaaga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| |||||||||| |
|
|
| T |
59693 |
agagagaaggccacttaggtgctccttgttagagacaggttgaaggattatgtgacttttatatattttttctttttagaaagtgggattagaaaaaaga |
59594 |
T |
|
| Q |
115 |
atcggctttttcatagatttttattttcgatatcataaaggtgatggagagaacgagccacgaaggactttatgtattttaaattatgtggcaatgaatt |
214 |
Q |
| |
|
| ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
59593 |
ttgggcttttccatagatttttattttcaatatcata----------ggagaacgagccacgaaggacttaatgtattttaagttatgtggcaatgaatt |
59504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 137; Significance: 4e-71; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 6323 - 6108
Alignment:
| Q |
18 |
gagaaggccacttaggtgctccttgttagagacaggttgaaggattatgtgacttttatnnnnnnnnntattttagaaagagagatcagaaaaaagaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
6323 |
gagaaggccacttaggtgctccttgttagacacaggttgaaggattatgtgacttttatatattttttcattttagaaagagggattagaaaaaagaatg |
6224 |
T |
|
| Q |
118 |
ggctttttcatagatttttattttcgatatcataaaggtgatggagagaacgagccacgaaggactttatgtattttaaattatgtggcaatgaattatc |
217 |
Q |
| |
|
| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6223 |
gacttttccctagatttttattttgaatatcataaaggtgatggagagaacgagccacgaaggactttatgtattttaagatatgtggcaatgaattatc |
6124 |
T |
|
| Q |
218 |
aaggtgagtatgaatt |
233 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
6123 |
aaggtgagtaagaatt |
6108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 2e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 292 - 595
Target Start/End: Complemental strand, 18586071 - 18585771
Alignment:
| Q |
292 |
gattacacaaatcaactataaagattcctaaaatttcagatagtgtgtaacagttatctctt-atcttttcaaagataattttctcctttcattttttat |
390 |
Q |
| |
|
||||||| | ||||||| |||||| ||||||||| ||| | ||||||||||||||||||||| ||||||||||||||||| |||||||| | ||| || | |
|
|
| T |
18586071 |
gattacaaatatcaactctaaagactcctaaaatctcaaagagtgtgtaacagttatctctttatcttttcaaagataatcttctccttccttttcttct |
18585972 |
T |
|
| Q |
391 |
tgtaagattcattcacacttccaattcatttgtaagataaaattcacagttagctttaagggtattaaagtgtaggttaattagaaagttgaaacgtatt |
490 |
Q |
| |
|
||| |||||||||| |||| |||||||||||||||| |||| || || ||||||||||||||| ||||||||||| |||||||||| || || || |
|
|
| T |
18585971 |
tgtctgattcattcaaacttacaattcatttgtaagagaaaaatctcatctagctttaagggtat----gtgtaggttaagtagaaagttgtaaagtctt |
18585876 |
T |
|
| Q |
491 |
gtgtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaa |
590 |
Q |
| |
|
|||||||||||||| | | |||| || || ||||| | ||||||||||||||||||||||| |||| ||| ||||||| ||||||| ||||||| |
|
|
| T |
18585875 |
gtgtgacttagcaaaagagatcgtgactttgtcgaagcttagaaaatacaggttgtaattgttccaaaggaacaaagttgtacggtgcaggagttgagaa |
18585776 |
T |
|
| Q |
591 |
ggttg |
595 |
Q |
| |
|
||||| |
|
|
| T |
18585775 |
ggttg |
18585771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 519052 - 518926
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggt |
593 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||| || | ||| || ||||| | ||||||||||||||| || |
|
|
| T |
519052 |
acttagcaa-gaaaggtgtaagcctgctgaggctaagagaatacagttgttgtaattgtt-caggtgaacaaggttgtaaggtgcaggatttgagaa-gt |
518956 |
T |
|
| Q |
594 |
tgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
|
|
| T |
518955 |
tatctcaagcatcatagtggaaaatctcac |
518926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 521558 - 521432
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggt |
593 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||| || | ||| || ||||| | ||||||||||||||| || |
|
|
| T |
521558 |
acttagcaa-gaaaggtgtaagcctgctgaggctaagagaatacagttgttgtaattgtt-caggtgaacaaggttgtaaggtgcaggatttgagaa-gt |
521462 |
T |
|
| Q |
594 |
tgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
|
|
| T |
521461 |
tatctcaagcatcatagtggaaaatctcac |
521432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 17420664 - 17420538
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggt |
593 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||| || | ||| || ||||| | ||||||||||||||| || |
|
|
| T |
17420664 |
acttagcaa-gaaaggtgtaagcctgctgaggctaagagaatacagttgttgtaattgtt-caggtgaacaaggttgtaaggtgcaggatttgagaa-gt |
17420568 |
T |
|
| Q |
594 |
tgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
|
|
| T |
17420567 |
tatctcaagcatcatagtggaaaatctcac |
17420538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 2e-45; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 292 - 623
Target Start/End: Original strand, 38460993 - 38461325
Alignment:
| Q |
292 |
gattacacaaatcaactataaagattcctaaaatttcagatagtgtgtaacagttatctcttatcttttcaaagataattttctcctttcattttttatt |
391 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| | | | ||||||||||| || ||||||||||||||||||||| | ||| ||| | ||| || || |
|
|
| T |
38460993 |
gattaaacaaatcaactataaagattcctaaaatcttaaagagtgtgtaacaattctctcttatcttttcaaagatattcttcctcttccttttcttctt |
38461092 |
T |
|
| Q |
392 |
gta-agattcattcacacttccaattcatttgtaagataaaattcacagttagctttaagggtattaaagtgtaggttaattagaaagttgaaacgtatt |
490 |
Q |
| |
|
|| | ||||||||| |||||||| |||||||||||| ||||| | | ||||||||||||||||||||||| ||||| |||| | || || || || |
|
|
| T |
38461093 |
gtccaaattcattcaaacttccaaatcatttgtaagagaaaatcta-atatagctttaagggtattaaagtgttagttaagtagagaagtgtaaagtctt |
38461191 |
T |
|
| Q |
491 |
gtgtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaataaa-tttgtacgatgcaggatttgaga |
589 |
Q |
| |
|
|||||| |||| || |||||||||||||| | ||||||||| |||||||| || ||||||||||||| || ||| |||||| | |||| || |||||| |
|
|
| T |
38461192 |
gtgtgatttagtaaagaaagttgtgagcccgatgaggcttagagaatacaaattataattgttccaagagagcaaagtttgtaaggtgcaagagttgaga |
38461291 |
T |
|
| Q |
590 |
aggttgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
|||||| ||||| |||| ||||| ||| |||||| |
|
|
| T |
38461292 |
aggttgtctcaagcatcatagtggaaactctcac |
38461325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 402 - 623
Target Start/End: Complemental strand, 40408393 - 40408173
Alignment:
| Q |
402 |
ttcacacttccaattcatttgtaagataaaattcacagttagctttaagggtattaaagtgtaggttaattagaaagttgaaacgtattgtgtgacttag |
501 |
Q |
| |
|
|||| |||||||| ||| |||||| | |||| || || ||| ||||||||||||||||||| ||| | ||||||||| || | ||||||||||||| |
|
|
| T |
40408393 |
ttcaaacttccaaatcaattgtaaaagaaaaatctcatctagttttaagggtattaaagtgttagttgagtagaaagttataaattcttgtgtgacttag |
40408294 |
T |
|
| Q |
502 |
caacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggttgcctcaa |
601 |
Q |
| |
|
|| |||||||| ||||| |||| ||||| |||||||| ||||||||| ||||||||||| ||| ||||| | ||||||| ||||| ||||| ||||| |
|
|
| T |
40408293 |
cagacaaagttgtaagcctactgaagcttagagaatacatgttgtaattattccaagggaacaaagttgtaaggtgcaggagttgag-aggttatctcaa |
40408195 |
T |
|
| Q |
602 |
acatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
||||| || || |||||||||| |
|
|
| T |
40408194 |
acatcataatggaaaatctcac |
40408173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 472 - 589
Target Start/End: Original strand, 22146455 - 22146571
Alignment:
| Q |
472 |
tagaaagttgaaacgtattgtgtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaataaatttgt |
571 |
Q |
| |
|
|||||| ||| || || |||||||||||||||| || ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| || |||| |
|
|
| T |
22146455 |
tagaaaattgtaaagtcttgtgtgacttagcaaacaa-gttgtaagcctgctgagacttagagaatacaggttgtaattgttccaagggaacaatgttgt |
22146553 |
T |
|
| Q |
572 |
acgatgcaggatttgaga |
589 |
Q |
| |
|
|||||| |||| |||||| |
|
|
| T |
22146554 |
acgatgtaggagttgaga |
22146571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 628
Target Start/End: Complemental strand, 18614585 - 18614450
Alignment:
| Q |
493 |
gtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaagg |
592 |
Q |
| |
|
||||||||| || |||||||| ||| || || | |||| |||||||| ||||||| ||||||||||| ||| ||||| | |||| || || |||| | |
|
|
| T |
18614585 |
gtgacttagaaagaaaagttgtaagcttgttgcgacttagagaatacatgttgtaaactttccaagggaagaaaattgtaaggtgcatgagtttagaaag |
18614486 |
T |
|
| Q |
593 |
ttgcctcaaacatcgtagtgaaaaatctcacctaag |
628 |
Q |
| |
|
||| |||| |||| ||||| ||||||||||||||| |
|
|
| T |
18614485 |
ttgtttcaagcatcatagtggaaaatctcacctaag |
18614450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 27159284 - 27159158
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggt |
593 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||| || | ||| || ||||| | ||||||||||||||| || |
|
|
| T |
27159284 |
acttagcaa-gaaaggtgtaagcctgctgaggctaagagaatacagttgttgtaattgtt-caggtgaacaaggttgtaaggtgcaggatttgagaa-gt |
27159188 |
T |
|
| Q |
594 |
tgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
|
|
| T |
27159187 |
tatctcaagcatcatagtggaaaatctcac |
27159158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 27169632 - 27169506
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggt |
593 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||| || | ||| || ||||| | ||||||||||||||| || |
|
|
| T |
27169632 |
acttagcaa-gaaaggtgtaagcctgctgaggctaagagaatacagttgttgtaattgtt-caggtgaacaaggttgtaaggtgcaggatttgagaa-gt |
27169536 |
T |
|
| Q |
594 |
tgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
|
|
| T |
27169535 |
tatctcaagcatcatagtggaaaatctcac |
27169506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 19343015 - 19343074
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttc |
554 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
19343015 |
acttagcaa-gaaaggtgtaagcctgctgaggcttagagaatacagttgttgtaattgttc |
19343074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 441 - 617
Target Start/End: Complemental strand, 9760949 - 9760773
Alignment:
| Q |
441 |
tagctttaagggtattaaagtgtaggttaattagaaagttgaaacgtattgtgtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaataca |
540 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||| || || || || ||||||||||||| |||||||||||| |||||||||||| |||||||| |
|
|
| T |
9760949 |
tagctttaagggtattaaagtgttagttgaatagaaaagtgtaaagtcttttgtgacttagcaaagaaagttgtgagtatgctgaggcttagagaataca |
9760850 |
T |
|
| Q |
541 |
ggttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggttgcctcaaacatcgtagtgaaaaa |
617 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| | ||||||| ||||||| |||| ||||| |||||||||| |||| |
|
|
| T |
9760849 |
ggttgtaattgttccaagggaacaaagttgtaaggtgcaggagttgagaatgttgtctcaagcatcgtagtggaaaa |
9760773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 441 - 589
Target Start/End: Complemental strand, 6314906 - 6314756
Alignment:
| Q |
441 |
tagctttaagggtattaaagtgt-aggttaattagaaagttgaaacgtattgtgtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaatac |
539 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||||||| || || | |||||||||||||| || ||||| ||||||||||||||| ||||||| |
|
|
| T |
6314906 |
tagctttaagggtattaaagtgttaggttgagcagaaagttgtaaagtctagtgtgacttagcaaacaaggttgtaagcctgctgaggcttcgagaatac |
6314807 |
T |
|
| Q |
540 |
ag-gttgtaattgttccaagggaataaatttgtacgatgcaggatttgaga |
589 |
Q |
| |
|
|| |||||||||||||||||||| ||| |||| | |||||||||||||| |
|
|
| T |
6314806 |
agttttgtaattgttccaagggaacaaaattgtttggtgcaggatttgaga |
6314756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 490 - 623
Target Start/End: Original strand, 13154866 - 13154999
Alignment:
| Q |
490 |
tgtgtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaataaatttgtacgatgcaggatttgaga |
589 |
Q |
| |
|
|||||||||||| || |||||||| |||| ||||||||||| |||||||| |||||||| |||| ||| || | ||||||| | ||||||| |||||| |
|
|
| T |
13154866 |
tgtgtgacttagtaagaaaagttgtaagccagctgaggcttagagaatacaagttgtaatcgttcaaagataacagatttgtaaggtgcaggagttgaga |
13154965 |
T |
|
| Q |
590 |
aggttgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||| ||||| |||| |||||||||||||||| |
|
|
| T |
13154966 |
atgtttgctcaagcatcatagtgaaaaatctcac |
13154999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 490 - 623
Target Start/End: Original strand, 13159722 - 13159855
Alignment:
| Q |
490 |
tgtgtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaataaatttgtacgatgcaggatttgaga |
589 |
Q |
| |
|
|||||||||||| || |||||||| |||| ||||||||||| |||||||| |||||||| |||| ||| || | ||||||| | ||||||| |||||| |
|
|
| T |
13159722 |
tgtgtgacttagtaagaaaagttgtaagccagctgaggcttagagaatacaagttgtaatcgttcaaagataacagatttgtaaggtgcaggagttgaga |
13159821 |
T |
|
| Q |
590 |
aggttgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||| ||||| |||| |||||||||||||||| |
|
|
| T |
13159822 |
atgtttgctcaagcatcatagtgaaaaatctcac |
13159855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 26140415 - 26140498
Alignment:
| Q |
292 |
gattacacaaatcaactataaagattcctaaaatttcagatagtgtgtaacagttatctcttatcttttcaaagataattttct |
375 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| | | | ||||||||||| || |||||||||||||||| |||||| |||| |
|
|
| T |
26140415 |
gattacacaaatcaactctaaatattcctaaaatcttaaagagtgtgtaacatttctctcttatcttttcaatgataatcttct |
26140498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 292 - 370
Target Start/End: Original strand, 25509300 - 25509378
Alignment:
| Q |
292 |
gattacacaaatcaactataaagattcctaaaatttcagatagtgtgtaacagttatctcttatcttttcaaagataat |
370 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| | | | ||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
25509300 |
gattacacaaatcaactctaaatattcctaaaatcttaaagagtgtgtaacaattctctcttatcttttcaatgataat |
25509378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 292 - 370
Target Start/End: Original strand, 26022738 - 26022816
Alignment:
| Q |
292 |
gattacacaaatcaactataaagattcctaaaatttcagatagtgtgtaacagttatctcttatcttttcaaagataat |
370 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| | | | |||||||||||||| |||||||| ||||||| |||||| |
|
|
| T |
26022738 |
gattacacaaatcaactctaaatattcctaaaatcttaaagagtgtgtaacagttctctcttatattttcaatgataat |
26022816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 554
Target Start/End: Original strand, 28093322 - 28093385
Alignment:
| Q |
491 |
gtgtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttc |
554 |
Q |
| |
|
||||||||||| || ||| ||||| ||||||| ||| |||| ||||||||||||||| |||||| |
|
|
| T |
28093322 |
gtgtgacttagaaaggaaggttgtaagcctgccgagacttagagaatacaggttgtagttgttc |
28093385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 623
Target Start/End: Original strand, 34766057 - 34766183
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggt |
593 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||| || | ||| || ||||| | ||||||||||||||| || |
|
|
| T |
34766057 |
acttagcaa-gaaaggtgtaagcctgctgaggctaagagaatacagttgttgtaattgtt-caggtgaacaaggttgtaaggtgcaggatttgagaa-gt |
34766153 |
T |
|
| Q |
594 |
tgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
|
|
| T |
34766154 |
tatctcaagcatcatagtggaaaatctcac |
34766183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 6e-36; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 293 - 601
Target Start/End: Complemental strand, 11605876 - 11605568
Alignment:
| Q |
293 |
attacacaaatcaactataaagattcctaaaatttcagatagtgtgtaacagttatctcttatcttttcaaagataattttctcctttcattttttattg |
392 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| | | ||||||||||| ||||||||||| | |||||||||||| |||||| |||| ||| |
|
|
| T |
11605876 |
attacataaatcaactttaaagattcctaaaattttaaagagtgtgtaacaacattctcttatcttcttaaagataattttatccttttccttttc-ttg |
11605778 |
T |
|
| Q |
393 |
ta-agattcattcacacttccaattcatttgtaagataaaattcacagttagctttaagggtattaaagtgtaggttaattagaaagttgaaacgtattg |
491 |
Q |
| |
|
| | ||||||||| |||||| | ||||||| || ||| || || |||||||||| ||||| |||| | ||| | |||||||||| || || ||| |
|
|
| T |
11605777 |
tccaaattcattcaaacttcctaatcatttggaaagagaaactctcatctagctttaagagtattgaagtattagttgagtagaaagttgtaaagtcttg |
11605678 |
T |
|
| Q |
492 |
tgtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaag |
591 |
Q |
| |
|
|||||||| |||| |||||||||||||||| ||||||||| |||||||| ||||||| |||||||||||| ||| ||||| | ||||||| ||||||| |
|
|
| T |
11605677 |
tgtgactttgcaaagaaagttgtgagcctgttgaggcttagagaatacaatttgtaatcgttccaagggaacaaagttgtaaggtgcaggagttgagaaa |
11605578 |
T |
|
| Q |
592 |
gttgcctcaa |
601 |
Q |
| |
|
|||| ||||| |
|
|
| T |
11605577 |
gttgtctcaa |
11605568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 397 - 554
Target Start/End: Original strand, 33091820 - 33091977
Alignment:
| Q |
397 |
attcattcacacttccaattcatttgtaagataaaattcacagttagctttaagggtattaaagtgt-aggttaattagaaagttgaaacgtattgtgtg |
495 |
Q |
| |
|
||||||||| |||||||| ||||| |||| |||| || || ||||||||||| ||||||||||| ||||| | ||||||||| || || |||||| |
|
|
| T |
33091820 |
attcattcaaacttccaaatcattgtaaagagaaaagtctcatctagctttaagg-tattaaagtgttaggttgagcagaaagttgtaaagtcttgtgta |
33091918 |
T |
|
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttc |
554 |
Q |
| |
|
||||| ||| || ||||| |||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
33091919 |
acttaacaaacaaggttgtaagcctgttgaggcttaaagaataaagtttgtaattgttc |
33091977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 444 - 518
Target Start/End: Original strand, 40702594 - 40702668
Alignment:
| Q |
444 |
ctttaagggtattaaagtgtaggttaattagaaagttgaaacgtattgtgtgacttagcaacgaaagttgtgagc |
518 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||||||| || || |||||||||||||||| ||||||| |||| |
|
|
| T |
40702594 |
ctttaaaggtattaaagtgtaggttgagtagaaagttgtaaagtcttgtgtgacttagcaaaaaaagttgggagc |
40702668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 623
Target Start/End: Original strand, 14946829 - 14946936
Alignment:
| Q |
516 |
agcctgctgaggcttaaagaatac-aggttgtaattgttccaagggaataaa-tttgtacgatgcaggatttgagaaggttgcctcaaacatcgtagtga |
613 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||| || | ||||||| |||||| | ||||||||||||| ||||| ||||| |||| ||||| |
|
|
| T |
14946829 |
agcctgctgaggcttagagaatacaaggttgtaattgtt-caggtgaataaagtttgtaaggtgcaggatttgag-aggttatctcaagcatcatagtgg |
14946926 |
T |
|
| Q |
614 |
aaaatctcac |
623 |
Q |
| |
|
||| |||||| |
|
|
| T |
14946927 |
aaactctcac |
14946936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 510 - 562
Target Start/End: Original strand, 40703114 - 40703166
Alignment:
| Q |
510 |
gttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaa |
562 |
Q |
| |
|
|||| |||||||||||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
40703114 |
gttgggagcctgctgaggcatagagaatacatattgtaattgttccaagggaa |
40703166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 9e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 400 - 582
Target Start/End: Original strand, 37817655 - 37817837
Alignment:
| Q |
400 |
cattcacacttccaattcatttgtaagataaaattcacagttagctttaagggtattaaagtgtaggttaattagaaagttgaaacgtattgtgtgactt |
499 |
Q |
| |
|
|||||| |||||||| |||||||||||| |||| || || ||||| |||| ||||||||||||||| | | || ||||||| || || ||| |||||| |
|
|
| T |
37817655 |
cattcaaacttccaaatcatttgtaagagaaaaatctcatctagctctaagagtattaaagtgtaggctgagtataaagttgtaaagtcttgcatgactt |
37817754 |
T |
|
| Q |
500 |
agcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaataaatttgtacgatgcagga |
582 |
Q |
| |
|
||||| |||||| || ||| || ||||||||| |||||||| ||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
37817755 |
agcaaagaaagtcgtaagcatgatgaggcttagagaatacatgttgtaattgttccaagggaacaaggttgtacgatgcagga |
37817837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 443 - 589
Target Start/End: Original strand, 18537297 - 18537443
Alignment:
| Q |
443 |
gctttaagggtattaaagtgtaggttaattagaaagttgaaacgtattgtgtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaatacagg |
542 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||| || || || ||||||||||| |||||||||||| | |||||||||| |||||||| | |
|
|
| T |
18537297 |
gctttaaaggtattaaagtgtaggttgagtagaaagttttaaagtccagtttgacttagcaatcaaagttgtgagcttactgaggcttagagaatacaag |
18537396 |
T |
|
| Q |
543 |
ttgtaattgttccaagggaataaatttgtacgatgcaggatttgaga |
589 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| || || |||||| |
|
|
| T |
18537397 |
ttgtaattgttccaagggaacaaagttgtacgatacaagagttgaga |
18537443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 441 - 589
Target Start/End: Complemental strand, 12840872 - 12840723
Alignment:
| Q |
441 |
tagctttaagggtattaaagtgt-aggttaattagaaagttgaaacgtattgtgtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaatac |
539 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||||||| || || | | |||||||| || || | ||| ||| || ||||||||| ||||||| |
|
|
| T |
12840872 |
tagctttaagggtattaaagtgttaggttgagcagaaagttgtaatgtctggcatgacttagtaaacaaggatgtaagcttgttgaggcttagagaatac |
12840773 |
T |
|
| Q |
540 |
aggttgtaattgttccaagggaataaatttgtacgatgcaggatttgaga |
589 |
Q |
| |
|
|| || ||||||||||||||||| || ||||| | | |||||||||||| |
|
|
| T |
12840772 |
agtttataattgttccaagggaacaaggttgtaaggtacaggatttgaga |
12840723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 331
Target Start/End: Original strand, 37817541 - 37817580
Alignment:
| Q |
292 |
gattacacaaatcaactataaagattcctaaaatttcaga |
331 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37817541 |
gatttcacaaatcaactataaagattcctaaaatctcaga |
37817580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 9e-29; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 397 - 622
Target Start/End: Complemental strand, 11044173 - 11043949
Alignment:
| Q |
397 |
attcattcacacttccaattcatttgtaagataaaattcacagttagctttaagggtattaaagtgtaggttaattagaaagttgaaacgtattgtgtga |
496 |
Q |
| |
|
||||||||| |||| || |||| ||||||| |||| || || || ||||||||||||||||||||||||| | ||||||| || | || |||||||| |
|
|
| T |
11044173 |
attcattcaaactttgaaatcatctgtaagagaaaaatctcatataactttaagggtattaaagtgtaggttgagtagaaagctgtatagtcttgtgtga |
11044074 |
T |
|
| Q |
497 |
cttagcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggttgc |
596 |
Q |
| |
|
|||||||| ||||||||||||||| | || ||| ||||||||||||||||| |||||||||||| ||| || || | ||||||| ||||| ||||| |
|
|
| T |
11044073 |
cttagcaaagaaagttgtgagcctagtaagactttgagaatacaggttgtaatagttccaagggaacaaagttatatggtgcaggagttgag-aggttat |
11043975 |
T |
|
| Q |
597 |
ctcaaacatcgtagtgaaaaatctca |
622 |
Q |
| |
|
||||| ||| ||||||||| ||||| |
|
|
| T |
11043974 |
ctcaagcattatagtgaaaattctca |
11043949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 397 - 562
Target Start/End: Complemental strand, 13430984 - 13430818
Alignment:
| Q |
397 |
attcattcacacttccaattcatttgtaagataaaattcacagttagctttaagggtattaaagtgt-aggttaattagaaagttgaaacgtattgtgtg |
495 |
Q |
| |
|
||||||||| ||||| || ||| | ||||||||||| || || || |||||||||||||||| ||| ||||| | ||||||||| || |||||||||| |
|
|
| T |
13430984 |
attcattcaaacttcaaaatcaatcgtaagataaaagtctcatctaactttaagggtattaaattgttaggttgagcagaaagttggaaagtattgtgtg |
13430885 |
T |
|
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaa |
562 |
Q |
| |
|
||||||||| ||| ||||| ||| | ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
13430884 |
acttagcaaagaaggttgtaagcttcatgaggcttagagaatacagtttgtaattgttccaagggaa |
13430818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 493 - 623
Target Start/End: Complemental strand, 20649724 - 20649594
Alignment:
| Q |
493 |
gtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaagg |
592 |
Q |
| |
|
|||||||||||| |||||||||||||| || |||| ||| |||||| | |||||||| ||||||| |||| | | |||| | |||| || ||||||||| |
|
|
| T |
20649724 |
gtgacttagcaaagaaagttgtgagcccgccgaggtttagagaatataagttgtaatcgttccaatggaacataagtgtaaggtgcatgagttgagaagg |
20649625 |
T |
|
| Q |
593 |
ttgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
||| |||||||||| ||||| ||| |||||| |
|
|
| T |
20649624 |
ttgtctcaaacatcatagtggaaactctcac |
20649594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 562
Target Start/End: Complemental strand, 29708661 - 29708596
Alignment:
| Q |
497 |
cttagcaacgaaagttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaa |
562 |
Q |
| |
|
|||||||| |||||||| |||||| | ||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
29708661 |
cttagcaagaaaagttgtaagcctgttaaggcttagagaatacaggttgtaattgttctaagggaa |
29708596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 623
Target Start/End: Original strand, 20492749 - 20492856
Alignment:
| Q |
516 |
agcctgctgaggcttaaagaatac-aggttgtaattgttccaagggaataaa-tttgtacgatgcaggatttgagaaggttgcctcaaacatcgtagtga |
613 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||| || | ||||||| |||||| | ||||||||||||| ||||| ||||| |||| ||||| |
|
|
| T |
20492749 |
agcctgctgaggcttagagaatacaaggttgtaattgtt-caggtgaataaagtttgtaaggtgcaggatttgag-aggttttctcaagcatcatagtgg |
20492846 |
T |
|
| Q |
614 |
aaaatctcac |
623 |
Q |
| |
|
||| |||||| |
|
|
| T |
20492847 |
aaactctcac |
20492856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 739
Target Start/End: Complemental strand, 29708490 - 29708427
Alignment:
| Q |
676 |
gtgttccattcttctatcccttaactcttcacttacaacattcacatcacacacaaagttattt |
739 |
Q |
| |
|
|||||| |||||||||||||| |||||| ||||| | |||||||||||||||||| |||||| |
|
|
| T |
29708490 |
gtgttcgattcttctatccctatactctttacttatagtattcacatcacacacaaaattattt |
29708427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 24872587 - 24872461
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggt |
593 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||| || | ||| || ||||| | ||||||||||||||| || |
|
|
| T |
24872587 |
acttagcaa-gaaaggtgtaagcctgctgaggctaagagaatacagttgttgtaattgtt-caggtgaacaaggttgtaaggtgcaggatttgagaa-gt |
24872491 |
T |
|
| Q |
594 |
tgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
|
|
| T |
24872490 |
tatctcaagcatcatagtggaaaatctcac |
24872461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 441 - 617
Target Start/End: Complemental strand, 15240014 - 15239838
Alignment:
| Q |
441 |
tagctttaagggtattaaagtgtaggttaattagaaagttgaaacgtattgtgtgacttagcaacgaaagttgtgagcctgctgaggcttaaagaataca |
540 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||| || || || ||||||||||| |||| || |||||||| |||||||||||| |||||||| |
|
|
| T |
15240014 |
tagctttaagggtattaaagtgtaagttgagtagaaagctgtaaagtcttgtgtgactttgcaaaataatttgtgagcttgctgaggcttagagaataca |
15239915 |
T |
|
| Q |
541 |
ggttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggttgcctcaaacatcgtagtgaaaaa |
617 |
Q |
| |
|
| ||||||||||||||| |||| |||||| || ||| |||| |||||||| ||||| |||| |||||||||| |
|
|
| T |
15239914 |
gattgtaattgttccaaaggaaccgggttgtacaatacagaatttaagaaggttttctcaagcatcatagtgaaaaa |
15239838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 522 - 620
Target Start/End: Complemental strand, 27834 - 27736
Alignment:
| Q |
522 |
ctgaggcttaaagaatacaggttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggttgcctcaaacatcgtagtgaaaaatct |
620 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| ||||||| |||| | || |||| |||||||||||| ||||| |||| || |||||||||| |
|
|
| T |
27834 |
ctgaggcttagagaatacaggttgtaatcgttccaagagaataaaactgtaaggtgtaggagttgagaaggttgtctcaagcatcatattgaaaaatct |
27736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 292 - 375
Target Start/End: Complemental strand, 2414 - 2331
Alignment:
| Q |
292 |
gattacacaaatcaactataaagattcctaaaatttcagatagtgtgtaacagttatctcttatcttttcaaagataattttct |
375 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| | | | ||||||||||| || |||||||||||||||| |||||| |||| |
|
|
| T |
2414 |
gattacacaaatcaactctaaatattcctaaaatcttaaagagtgtgtaacatttctctcttatcttttcaatgataatcttct |
2331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 562
Target Start/End: Original strand, 22892139 - 22892191
Alignment:
| Q |
510 |
gttgtgagcctgctgaggcttaaagaatacaggttgtaattgttccaagggaa |
562 |
Q |
| |
|
|||| |||||||||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
22892139 |
gttgggagcctgctgaggcgtagagaatacaggttgtaattgttctaagggaa |
22892191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 378
Target Start/End: Complemental strand, 19868203 - 19868117
Alignment:
| Q |
292 |
gattacacaaatcaactataaagattcctaaaatttcagatagtgtgtaacagttatctcttatcttttcaaagataattttctcct |
378 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| | | | |||||| | |||| ||||||||||||| |||||| || ||||||| |
|
|
| T |
19868203 |
gattccacaaatcaactctaaagattcctaaaatcttaaagagtgtgaatcagtattctcttatctttttaaagatgatattctcct |
19868117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 444 - 518
Target Start/End: Original strand, 22891552 - 22891626
Alignment:
| Q |
444 |
ctttaagggtattaaagtgtaggttaattagaaagttgaaacgtattgtgtgacttagcaacgaaagttgtgagc |
518 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||||| || || ||||| |||||||||| ||||||| |||| |
|
|
| T |
22891552 |
ctttaagagtattaaagtgtaggttgagtagaaagttgtaaagtcttgtgcgacttagcaaaaaaagttgggagc |
22891626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 582
Target Start/End: Original strand, 34000586 - 34000651
Alignment:
| Q |
517 |
gcctgctgaggcttaaagaatacaggttgtaattgttccaagggaataaatttgtacgatgcagga |
582 |
Q |
| |
|
||||||||| | ||| ||||||||||||||||||||||||| ||| ||| |||||| |||||||| |
|
|
| T |
34000586 |
gcctgctgaagtttagagaatacaggttgtaattgttccaatagaacaaagttgtacaatgcagga |
34000651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 1974047 - 1973921
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggt |
593 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||| || | ||| || ||||| | ||||||||||||||| || |
|
|
| T |
1974047 |
acttagcaa-gaaaggtgtaagcctgctgaggctaagagaatacagttgttgtaattgtt-caggtgaacaaggttgtaaggtgcaggatttgagaa-gt |
1973951 |
T |
|
| Q |
594 |
tgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
|
|
| T |
1973950 |
tatctcaagcatcatagtggaaaatctcac |
1973921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 1988834 - 1988708
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggt |
593 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||| || | ||| || ||||| | ||||||||||||||| || |
|
|
| T |
1988834 |
acttagcaa-gaaaggtgtaagcctgctgaggctaagagaatacagttgttgtaattgtt-caggtgaacaaggttgtaaggtgcaggatttgagaa-gt |
1988738 |
T |
|
| Q |
594 |
tgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
|
|
| T |
1988737 |
tatctcaagcatcatagtggaaaatctcac |
1988708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0764 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0764
Description:
Target: scaffold0764; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 140 - 14
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggt |
593 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||| || | ||| || ||||| | ||||||||||||||| || |
|
|
| T |
140 |
acttagcaa-gaaaggtgtaagcctgctgaggctaagagaatacagttgttgtaattgtt-caggtgaacaaggttgtaaggtgcaggatttgagaa-gt |
44 |
T |
|
| Q |
594 |
tgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
|
|
| T |
43 |
tatctcaagcatcatagtggaaaatctcac |
14 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 623
Target Start/End: Original strand, 6469 - 6595
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggt |
593 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||| || | ||| || ||||| | ||||||||||||||| || |
|
|
| T |
6469 |
acttagcaa-gaaaggtgtaagcctgctgaggctaagagaatacagttgttgtaattgtt-caggtgaacaaggttgtaaggtgcaggatttgagaa-gt |
6565 |
T |
|
| Q |
594 |
tgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
|
|
| T |
6566 |
tatctcaagcatcatagtggaaaatctcac |
6595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 623
Target Start/End: Original strand, 10251 - 10377
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggt |
593 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||| || | ||| || ||||| | ||||||||||||||| || |
|
|
| T |
10251 |
acttagcaa-gaaaggtgtaagcctgctgaggctaagagaatacagttgttgtaattgtt-caggtgaacaaggttgtaaggtgcaggatttgagaa-gt |
10347 |
T |
|
| Q |
594 |
tgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
|
|
| T |
10348 |
tatctcaagcatcatagtggaaaatctcac |
10377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 623
Target Start/End: Original strand, 20626 - 20752
Alignment:
| Q |
496 |
acttagcaacgaaagttgtgagcctgctgaggcttaaagaatacag--gttgtaattgttccaagggaataaatttgtacgatgcaggatttgagaaggt |
593 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||| || | ||| || ||||| | ||||||||||||||| || |
|
|
| T |
20626 |
acttagcaa-gaaaggtgtaagcctgctgaggctaagagaatacagttgttgtaattgtt-caggtgaacaaggttgtaaggtgcaggatttgagaa-gt |
20722 |
T |
|
| Q |
594 |
tgcctcaaacatcgtagtgaaaaatctcac |
623 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
|
|
| T |
20723 |
tatctcaagcatcatagtggaaaatctcac |
20752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 856 times since January 2019
Visitors: 1285