View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-15 (Length: 687)
Name: NF0075-INSERTION-15
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-15 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 447
Target Start/End: Complemental strand, 29227282 - 29226842
Alignment:
| Q |
8 |
gaaacaagtataaaatacttacggtccaatagataaataatctagggcgattgtccccgtagagattttgattcacctgcataaaaatgaatcaatctta |
107 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29227282 |
gaaacaaatataaaatacttacggtccaatagataaacaatctagggcgattgtctccgtagagattttgattcacctgcataaaaatgaattaatctta |
29227183 |
T |
|
| Q |
108 |
actttattggcataaatacaaaattaagtacattttgaaaatgaaaggtagattaatgttgacatactaattgtcttttgaatgcaaaacaaaattgaat |
207 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29227182 |
actttattgacataaatacaaaattaagtacattttgaaaatgaaaggtagattaatgttgacatactaattgtcttttgaatgcaaaacaaaattgaat |
29227083 |
T |
|
| Q |
208 |
tcatttaaggaag-nnnnnnntgtagattttgnnnnnnnggcgggagggtaaattttgtatgaagagtttgttttacatttttaaaaggttgattacact |
306 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29227082 |
tcatttaaggaagaaaaaaaatgtagattttgtttttttggcgggagggtaaattttgtatgaagagtttgttttacatttttaaaagattgattacact |
29226983 |
T |
|
| Q |
307 |
atttcaaagatatttttattatagttgattccttaacaaatgttctaagtgtatttgttaacattttcctaattttaaatacattattagctagtgttaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29226982 |
atttcaaagatatttttattatagttgattccttaacaaatgttccaagtgtatttgttaacattttcctaattttaaatacattattagctagtgttaa |
29226883 |
T |
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| Q |
407 |
agtgtctaaaaatccggtacaatcataaatgaggtagcact |
447 |
Q |
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| T |
29226882 |
agtgtctaaaaatccggtacaatcataaatgatgtagcact |
29226842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 29246562 - 29246501
Alignment:
| Q |
8 |
gaaacaagtataaaatacttacggtccaatagataaataatctagggcgattgtccccgtag |
69 |
Q |
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||||||| |||||| ||||||| |||||| || |||| |||||||||||||||||||||||| |
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| T |
29246562 |
gaaacaaatataaattacttacagtccaaaaggtaaacaatctagggcgattgtccccgtag |
29246501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 29254805 - 29254750
Alignment:
| Q |
16 |
tataaaatacttacggtccaatagataaataatctagggcgattgtccccgtagag |
71 |
Q |
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|||||| ||||||| ||||||||||| || ||||| ||| |||||||||||||||| |
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| T |
29254805 |
tataaattacttactgtccaatagatgaacaatctggggagattgtccccgtagag |
29254750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 160; Significance: 6e-85; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 458 - 678
Target Start/End: Complemental strand, 35138 - 34919
Alignment:
| Q |
458 |
ttgaatgcaataatacgcttaaaaatatccatgtgtcnnnnnnngaaagaaggaaaattagaatgccgagaacttttctgcacaaaacttttccttgaaa |
557 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35138 |
ttgaatgcaataatacgcttaaaaatatccatgtgtctttttttgaaagaaggaagattagattgccgagaacttttctgcacaaaacttttccttgaaa |
35039 |
T |
|
| Q |
558 |
tgatgaacaagctgaaaagaaactaggaatttaccattattttttaggtttatgacaagctgaaaaagagannnnnnnnncctctctccttttaggtatg |
657 |
Q |
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| T |
35038 |
tgatgaacaagctgaaaagaaactaggaatttaccattattttttaggtttatgacaagctgaaaaagaga-ttttttttcctctctccttttaggtatg |
34940 |
T |
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| Q |
658 |
tgtgttttagctggctgtgat |
678 |
Q |
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||||||||||||||||||||| |
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| T |
34939 |
tgtgttttagctggctgtgat |
34919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 30917599 - 30917723
Alignment:
| Q |
17 |
ataaaatacttacggtccaatagataaataatctagggcgattgtccccgtagagattttgattcacctgcataaaaatgaatcaatcttaactttattg |
116 |
Q |
| |
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||||| ||||||| |||||||||| ||| |||||||| ||| |||||||||| | || |||||||||||||||| | | |||||| |||||||| |
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| T |
30917599 |
ataaattacttaccgtccaatagacaaacgatctagggagataatccccgtagatctggtggctcacctgcataaaaattacttgatcttagctttattg |
30917698 |
T |
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| Q |
117 |
gcataaatacaaaattaagtacatt |
141 |
Q |
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| T |
30917699 |
gctaaaatacaaaattaagtacatt |
30917723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 355
Target Start/End: Complemental strand, 36708573 - 36708496
Alignment:
| Q |
278 |
ttttacatttttaaaaggttgattacactatttcaaagatatttttattatagttg-attccttaacaaatgttctaag |
355 |
Q |
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||||||||||| ||||| |||||||||| ||||| || ||||||||| |||| ||| ||||||||| ||||||||||| |
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| T |
36708573 |
ttttacattttaaaaagtttgattacacaatttc-aatatatttttactatatttgtgttccttaactaatgttctaag |
36708496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 16503816 - 16503884
Alignment:
| Q |
278 |
ttttacatttttaaaaggttgattacactatttcaaagatatttttattatagttgattccttaacaaat |
347 |
Q |
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||||||||||||||||||||||||| || |||| | |||| ||||| ||||||| |||| ||||||||| |
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| T |
16503816 |
ttttacatttttaaaaggttgattatacaattt-tatgataattttaatatagtttattctttaacaaat |
16503884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 7671651 - 7671683
Alignment:
| Q |
313 |
aagatatttttattatagttgattccttaacaa |
345 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
7671651 |
aagatatttttattatatttgattccttaacaa |
7671683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 43814238 - 43814286
Alignment:
| Q |
23 |
tacttacggtccaatagataaataatctagggcgattgtccccgtagag |
71 |
Q |
| |
|
||||||| |||||||| ||||| | ||||||||| |||||||||||||| |
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| T |
43814238 |
tacttaccgtccaataaataaaaattctagggcggttgtccccgtagag |
43814286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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