View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0075-INSERTION-16 (Length: 800)

Name: NF0075-INSERTION-16
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0075-INSERTION-16
NF0075-INSERTION-16
[»] chr3 (1 HSPs)
chr3 (7-794)||(26575-27368)


Alignment Details
Target: chr3 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 7 - 794
Target Start/End: Complemental strand, 27368 - 26575
Alignment:
Q  7 aagaacaaccctccaatatggaatgggagatatcaaccatgatttgtctggcggagaaggcctctaaaatcatcagcaggaaacctatagaaacctgcaa 106  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27368 aagaacaaccctccaatatggaatgggagatatcagccatgatttgtctggcggagaaggcctctaaaatcatcagcaggaaacctatagaaacctgcaa 27269  T
Q  107 acagaatttagtcatccaagaaagttgacattatgattgttaagtatctaggaaaaaatgaaatgacaattttcatctattttctttattttcatgtctg 206  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27268 acagaatttagtcatccaaaaaagttgacattatgattgttaagtatctaggaaaaaatgaaatgataattttcatctattttctttattttcatgtctg 27169  T
Q  207 cactctgtagtcctgaacacttgcatataacacactgcgtcttacttggtaacattgctttcatttcgatgtgacatatattggtaccctagatgtttaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27168 cactctgtagtcctgaacacttgcatataacacactgcgtcttacttggtaacattgctttcatttctatgtgacatatattggtaccctagatgtttaa 27069  T
Q  307 atcgattgattagacacaacactgttcattgttttattcaaattcatataatcatattacaaaagaaaaaaccccaatggctaaactgatctctgtacta 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27068 atcgattgattagacacaacactgttcattgttttattcaaattcatataatcatattacaaaagaaaaaaccccaatggctaaactgatctctgtacta 26969  T
Q  407 tggagacatgcatttagggagtggttatacatatatctaccttagacaccaattaagatcaaatttagtttatgcttgagnnnnnnnagcagttaactga 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  26968 tggagacatgcatttagggagtggttatacatatatctaccttagacaccaattaagatcaaatttagtttatgcttgagtttttttagcagttaactga 26869  T
Q  507 agtttcttagttacatcgtatacctaatagctaattatttatattatgcactatgtttaccttgttgaatgcaattcttcagtttgttctcagnnnnnnn 606  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||           
T  26868 agtttcttagttacatcgtataactaatagctaattatttatattatgcactatgtttactttgttgaatgcaattcttcagtttgttttcagaaaaaaa 26769  T
Q  607 gcaaattgattcttcaaaattcagttcaagataccgcaggctcaaaagtatcatgtagtttactgaatgtggaaagtgtgatagatgatgatgcatgtga 706  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26768 gcaaattgattcttcaaaattcagttcaagatactgcaggctcaaaagtatcatgtagtttactgaatgtggaaagtgtgatagatgatgatgcatgtga 26669  T
Q  707 at--atcagtggagaggagctttcattagaggatggcgatgat-atg-tcatgcttatcttttc-aggcagtaaaaaat-acaatggaattggc 794  Q
    ||   ||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  26668 attagtcagtggagaggagctttcgttagaggatggcgatgataatgttcatgcttatcttttcaaggcagtaaaaaataacaatggaattggc 26575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 870 times since January 2019
Visitors: 1286