View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0075-INSERTION-18 (Length: 706)
Name: NF0075-INSERTION-18
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-18 |
 | |
|
| [»] scaffold1207 (1 HSPs) |
| | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0853 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 11 - 520
Target Start/End: Original strand, 6059637 - 6060147
Alignment:
| Q |
11 |
ggataatgagtgtgtggaaaattccaatgttgagtgtttagaagaccatgagatagttgatgatgtgtctaatgatttagaaccaaattcagaaaattcc |
110 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6059637 |
ggataataagtgtgtggaaaattccactattgagtgtttagaagaccatgagatagttgatgatgtgtctaatgatttagaaccaaattcagaaaattcc |
6059736 |
T |
|
| Q |
111 |
aagtcgcctgaagctaatatttgtcctattgttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggtt |
210 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6059737 |
aagtcgtctgaagctaatatttgtcctattgttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggtt |
6059836 |
T |
|
| Q |
211 |
ttggagttcgtgttcggtctactaagcaaagtttttgcatgtttgtatgcgctaatgaaggtacacatatagtgaagggtgaaaatgaagaagggaagag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6059837 |
ttggagttcgtgttcggtctactaagcaaaaattttgcttgtttgaatgcgctaatgaaggtacacatatagtgaagggtgaaaatgaagaagggaagag |
6059936 |
T |
|
| Q |
311 |
aaagcgttcaacctcaagaactgattgtaaagcatcacttactgtttcaaaagcagggaagagaagtaaatgggttataaaaagcataaacaat-ttcat |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
6059937 |
aaagcgttcaacctcaagaactgattgtaaagcatcacttactatttcaaaagcagggaagagaggtaaatgggttataaaaagcataaacaatgttcac |
6060036 |
T |
|
| Q |
410 |
aatcatggaatggttagtcctaagagtgtagcttatcttcggtctcacaagaaaatgactgcagcaactaaaagcctcgttgagaagtttgatgaagaag |
509 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6060037 |
aatcatggaatggttagtcctaagagtgtggcctatctgcggtctcataagaaaatgattgcagcaactaaaagcctcgttgagaagtttgatgaagaag |
6060136 |
T |
|
| Q |
510 |
gagtacctaca |
520 |
Q |
| |
|
||||||||||| |
|
|
| T |
6060137 |
gagtacctaca |
6060147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 554 - 643
Target Start/End: Original strand, 6060147 - 6060236
Alignment:
| Q |
554 |
aatgctttttctagtcgggattgctggaatcatcttagaaatctcagaagaggaaatcttgatgtgggagatgctcaagctgtctttaaa |
643 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6060147 |
aatgccttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaa |
6060236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 394
Target Start/End: Complemental strand, 10401254 - 10401175
Alignment:
| Q |
318 |
tcaacctcaagaactgattgtaaagcatca---cttactgtttcaaaagcagggaagagaagtaaatgggttataaaaag |
394 |
Q |
| |
|
||||||||||||| || |||||| |||||| ||| ||||||||||||| |||||||| |||||||||| |||||||| |
|
|
| T |
10401254 |
tcaacctcaagaattggttgtaaggcatcatcactttttgtttcaaaagcatggaagagatgtaaatgggtgataaaaag |
10401175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 394
Target Start/End: Complemental strand, 10403813 - 10403737
Alignment:
| Q |
318 |
tcaacctcaagaactgattgtaaagcatcacttactgtttcaaaagcagggaagagaagtaaatgggttataaaaag |
394 |
Q |
| |
|
|||||||| |||| || | |||| ||||||||| |||||||||||| |||||||| |||||||||| |||||||| |
|
|
| T |
10403813 |
tcaacctctagaaatggtcgtaaggcatcactttttgtttcaaaagcgtggaagagatgtaaatgggtgataaaaag |
10403737 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 10401467 - 10401368
Alignment:
| Q |
127 |
atatttgtcctattgttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcgtgttcg |
226 |
Q |
| |
|
||||||||||||||| | | |||||||||||||| ||| | || |||||||||| ||||| ||| || |||||| | ||||||||||||||| |||| |
|
|
| T |
10401467 |
atatttgtcctattggttgtttggaatttgactcccttgataacgttaaagaattctgcacattattcgctaagaaatagggttttggagttcgtattcg |
10401368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 10392846 - 10392744
Alignment:
| Q |
124 |
ctaatatttgtcctattgttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcgtgt |
223 |
Q |
| |
|
||||||||||||||| || | | |||||||||||||| ||| | || |||||||||| ||||| ||| || |||||| | ||||||||||||||| | |
|
|
| T |
10392846 |
ctaatatttgtcctactggttgtttggaatttgactcccttgataacgttaaagaattctgcacattattcgctaagaaatagggttttggagttcgtat |
10392747 |
T |
|
| Q |
224 |
tcg |
226 |
Q |
| |
|
||| |
|
|
| T |
10392746 |
tcg |
10392744 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 230; Significance: 1e-126; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 2181 - 2410
Alignment:
| Q |
11 |
ggataatgagtgtgtggaaaattccaatgttgagtgtttagaagaccatgagatagttgatgatgtgtctaatgatttagaaccaaattcagaaaattcc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2181 |
ggataatgagtgtgtggaaaattccaatgttgagtgtttagaagaccatgagatagttgatgatgtgtctaatgatttagaaccaaattcagaaaattcc |
2280 |
T |
|
| Q |
111 |
aagtcgcctgaagctaatatttgtcctattgttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2281 |
aagtcgcctgaagctaatatttgtcctattgttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggtt |
2380 |
T |
|
| Q |
211 |
ttggagttcgtgttcggtctactaagcaaa |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2381 |
ttggagttcgtgttcggtctactaagcaaa |
2410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 46 - 304
Target Start/End: Original strand, 8668305 - 8668566
Alignment:
| Q |
46 |
gtttagaagaccatgagatagttgatgatgtgtctaatgatttagaaccaaattcagaaaattccaagtcgcctgaagctaa---tatttgtcctattgt |
142 |
Q |
| |
|
|||| ||||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||| || | ||| |||| ||||||||||||||| |
|
|
| T |
8668305 |
gtttggaagatcatgagatagttgatcacgtgtctaatgatttagaaccaaatttggaaaattccaattcacatgagactaatactatttgtcctattgt |
8668404 |
T |
|
| Q |
143 |
tgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcgtgttcggtctactaagcaaagt |
242 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| || |||| | || ||||||| | |
|
|
| T |
8668405 |
tgatatggaattcgactccattgaagatgtaaaggaattctacacatcgtttgccaagaaagaaggttttggagttagtattcgtttcacaaagcaaaat |
8668504 |
T |
|
| Q |
243 |
ttttgcatgtttgtatgcgctaatgaaggtacacatatagtgaagggtgaaaatgaagaagg |
304 |
Q |
| |
|
|||| ||||| |||||| |||||||||||| |||| |||| | | ||||||||||||||| |
|
|
| T |
8668505 |
atttgtatgttggtatgcactaatgaaggtaaacatctagtaaggaatgaaaatgaagaagg |
8668566 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 472 - 672
Target Start/End: Complemental strand, 14197631 - 14197430
Alignment:
| Q |
472 |
agcaactaaaagcctcgttgagaagtttgatgaagaaggagtacctacagggaaagttgctacaatgtttcagggtgaagataatgctttttctagtcgg |
571 |
Q |
| |
|
||||||||| | ||| ||||||| ||||||||| ||||| ||| | ||||||||||||||||||||||||| |||| ||||||||||||||||||| | |
|
|
| T |
14197631 |
agcaactaataacctttttgagaa-tttgatgaa-aaggaatacatgcagggaaagttgctacaatgtttcatggtggagataatgctttttctagtgtg |
14197534 |
T |
|
| Q |
572 |
gattgctggaatcatcttagaaatc----tcagaagaggaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgag |
667 |
Q |
| |
|
|| ||||||||| |||||||| ||| | |||||| | || |||| |||||| ||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
14197533 |
gactgctggaat-atcttagacatcttaattagaagaaaacattttgacgtgggaaatgctcaagctgtctttaaattttgtaagcaaaaacaagttgag |
14197435 |
T |
|
| Q |
668 |
aatcc |
672 |
Q |
| |
|
||||| |
|
|
| T |
14197434 |
aatcc |
14197430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 318 - 706
Target Start/End: Original strand, 52409316 - 52409705
Alignment:
| Q |
318 |
tcaacctcaagaactgattgtaaagcatcacttactgtttcaaaagcagggaagagaagtaaatgggttataaaaagcataaacaatt-tcataatcatg |
416 |
Q |
| |
|
||||| || ||||||||||| || |||| ||||| ||||||||||||| ||||||| || |||||| ||| | |||| | | ||| ||||||||||| |
|
|
| T |
52409316 |
tcaacttctagaactgattgcaaggcattacttagtgtttcaaaagcatggaagaggagcaaatggagtatcataagcttcagtaatgatcataatcatg |
52409415 |
T |
|
| Q |
417 |
gaatggttagtcctaagagtgtagcttatcttcggtctcacaagaaaatgactgcagcaactaaaagcctcgttgagaagtttgatgaagaaggagtacc |
516 |
Q |
| |
|
||| |||| ||||||||||| ||||||| ||| ||| ||||||||| | || ||| || || ||||||||||||||||| || ||| |||| |
|
|
| T |
52409416 |
ccatgcttagccctaagagtgtgaattatcttaggtgtcataagaaaatgggtatgccagctaggagtcttgttgagaagtttgatgaggagggaatacc |
52409515 |
T |
|
| Q |
517 |
tacagggaaagttgctacaatgtttcagggtgaagataatgctttttctagtcgggattgctggaatcatcttagaaatctcagaagaggaaatcttgat |
616 |
Q |
| |
|
|||||| || ||||||| |||||| | ||| || || ||||||||||| | ||||| |||||||| ||||||||||| ||||| | ||||||| |
|
|
| T |
52409516 |
tacaggaaaggttgctaaaatgttcaatagtggaggtatgtctttttctagtagagattgttggaatcaccttagaaatcttcgaagaaggaatcttgta |
52409615 |
T |
|
| Q |
617 |
gtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgagaatcctaannnnnnnnatgcaatacaatgtgatgatgaa |
706 |
Q |
| |
|
| ||||||||||||||||| || || ||||| |||| ||| |||| |||| |||| || ||| ||||||||||||||||||| |
|
|
| T |
52409616 |
attggagatgctcaagctgtattcaacttttgtaagacaaagcaagctgaggatccaaattttttttatgaaatacaatgtgatgatgaa |
52409705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 40384277 - 40384233
Alignment:
| Q |
177 |
gaattctacacatcatttgccaagaaagaaggttttggagttcgt |
221 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||| ||||| |
|
|
| T |
40384277 |
gaattctacacgtcatttgctaagaaagaaggttttggaattcgt |
40384233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 52409145 - 52409197
Alignment:
| Q |
168 |
gatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcg |
220 |
Q |
| |
|
||||| || |||||||||| ||||||||| |||||||||||||||||| |||| |
|
|
| T |
52409145 |
gatgttaaggaattctacatatcatttgctaagaaagaaggttttggaattcg |
52409197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 318 - 672
Target Start/End: Complemental strand, 7776398 - 7776044
Alignment:
| Q |
318 |
tcaacctcaagaactgattgtaaagcatcacttactgtttcaaaagcagggaagagaagtaaatgggttataaaaagcataaacaatt-tcataatcatg |
416 |
Q |
| |
|
||||| || ||||||||||| || |||| ||||| ||||||||||||| ||||||| || |||||| ||| | |||| | | ||| ||||||||||| |
|
|
| T |
7776398 |
tcaacttctagaactgattgcaaggcattacttagtgtttcaaaagcatggaagaggagcaaatggagtatcataagcttcattaatgatcataatcatg |
7776299 |
T |
|
| Q |
417 |
gaatggttagtcctaagagtgtagcttatcttcggtctcacaagaaaatgactgcagcaactaaaagcctcgttgagaagtttgatgaagaaggagtacc |
516 |
Q |
| |
|
||| |||| ||||||||||| ||||||||||| ||| ||||||||| | || ||| || || ||||||||||||||||| || ||| |||| |
|
|
| T |
7776298 |
tcatgcttagccctaagagtgtgaattatcttcggtgtcataagaaaatgggtatgccagctaggagtcttgttgagaagtttgatgagga-ggaatacc |
7776200 |
T |
|
| Q |
517 |
tacagggaaagttgctacaatgtttcagggtgaagataatgctttttctagtcgggattgctggaatcatcttagaaatctcagaagaggaaatcttgat |
616 |
Q |
| |
|
|||||| || |||| | |||||| | ||| || || ||||||||||| | ||||| |||||||| ||||||||||| ||||| | ||||||| |
|
|
| T |
7776199 |
tacaggaaaggttgatgaaatgttcaatagtggaggtatgtctttttctagtagagattgttggaatcaccttagaaatcttcgaagaaggaatcttgta |
7776100 |
T |
|
| Q |
617 |
gtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgagaatcc |
672 |
Q |
| |
|
| ||||||||||||| ||| || || ||||| |||| ||| |||| ||||||||| |
|
|
| T |
7776099 |
attggagatgctcaagttgtattcaacttttgtaagacaaagcaagctgagaatcc |
7776044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 7776590 - 7776517
Alignment:
| Q |
147 |
atggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcg |
220 |
Q |
| |
|
||||||||| || ||||| ||||| || |||||||||| ||||||||| |||||||||||||||||| |||| |
|
|
| T |
7776590 |
atggaatttaacaccattaatgatgttaaggaattctacatatcatttgctaagaaagaaggttttggaattcg |
7776517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0853 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0853
Description:
Target: scaffold0853; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 1316 - 1395
Alignment:
| Q |
142 |
ttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcgt |
221 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||| | || |||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
1316 |
ttgatatggaatttgactctcttgatgatgttaaaaatttatacacatcatttgctaaaaaagaaggttttggaattcgt |
1395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 23205549 - 23205470
Alignment:
| Q |
142 |
ttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcgt |
221 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||| | || |||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
23205549 |
ttgatatggaatttgactctcttgatgatgttaaaaatttatacacatcatttgctaaaaaagaaggttttggaattcgt |
23205470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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