View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0075-INSERTION-20 (Length: 709)

Name: NF0075-INSERTION-20
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0075-INSERTION-20
NF0075-INSERTION-20
[»] chr7 (7 HSPs)
chr7 (173-709)||(10597851-10598387)
chr7 (8-102)||(10597685-10597779)
chr7 (321-440)||(10881613-10881733)
chr7 (594-709)||(10881355-10881470)
chr7 (600-701)||(10880383-10880484)
chr7 (592-660)||(19473104-19473172)
chr7 (578-709)||(19473421-19473552)
[»] chr1 (2 HSPs)
chr1 (321-708)||(23271112-23271509)
chr1 (321-708)||(44679872-44680269)
[»] chr8 (5 HSPs)
chr8 (482-703)||(18615542-18615758)
chr8 (321-426)||(14198161-14198267)
chr8 (582-708)||(14198379-14198505)
chr8 (321-426)||(18615825-18615931)
chr8 (8-71)||(24750424-24750487)
[»] chr6 (2 HSPs)
chr6 (561-708)||(2482404-2482551)
chr6 (321-426)||(2482169-2482275)
[»] chr4 (5 HSPs)
chr4 (561-708)||(27107273-27107420)
chr4 (527-708)||(12631555-12631736)
chr4 (321-426)||(27107549-27107655)
chr4 (321-404)||(12631865-12631949)
chr4 (24-97)||(56367953-56368026)
[»] chr5 (2 HSPs)
chr5 (201-243)||(23355206-23355248)
chr5 (8-45)||(113946-113983)
[»] chr2 (1 HSPs)
chr2 (294-339)||(13511789-13511834)


Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 173 - 709
Target Start/End: Original strand, 10597851 - 10598387
Alignment:
Q  173 tattttgattgaataaatgtaaacttgtatcaaatcacacatacatttcttgtcactcgtttctcgctatgacttgggcaagaaagaaggttagaagata 272  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10597851 tattttgattgaataaatgtaa-cttgtatcaaatcacacatacatttcttgtcactcgtttctcgctatgacttgggcaagaaagaaggttagaagata 10597949  T
Q  273 tgttttggtcctctacttacgttgattggtataaaaaatataatgatattgtatttgatactacatagaaaatcaattcttatgaaatgacatttagaat 372  Q
    ||||||||||||||||||||||  |   ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  10597950 tgttttggtcctctacttacgtatacatgtataaaaaatataatgatattgtatttgatactacatagaaggtcaattcttatgaaatgacatttagaat 10598049  T
Q  373 ttttgtaggcatgaatagttatggaaagactatacattaggatgtgcactcttatagaataaaacaatgtttgctttttgttggtcagtgaag-taacta 471  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10598050 ttttgtaggcataaatagttatggaaagactatacattagaatgtgcactcttatagaataaaacaatgtttgctttttgttggtcagtgaaggtaacta 10598149  T
Q  472 tttcttacatattttttcatttgattatatgatcttttttggtatacatatataggcttctcatttttaattaataacgaaaatttgattgcttttaact 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10598150 tttcttacatattttttcatttgattatatgatcttttttggtatacatatataggcatctcatttttaattaataacgaaaatttgattgcttttaact 10598249  T
Q  572 tttctatagacttttgtatatttgatgaagaagccaccaaagactatattaactgttcaaaatccttggatgaatgatgaaatctcaaatgaattgccat 671  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10598250 tttctatagacttttatatatttgatgaagaagccaccaaagactatattaactgttcaaaatccttggatgaatgatgaaatctcaaatgaattgccat 10598349  T
Q  672 caacaaaacatagtttttgcatatgacacataactttt 709  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10598350 caacaaaacatagtttttgcatatgacacataactttt 10598387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 10597685 - 10597779
Alignment:
Q  8 acatatttgtgcaatggtttctcagaaaagtttgaatgctcgtcttgttcttaagtttgaatgtgaaaaggatgaagataactgtctcatctgac 102  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10597685 acatatttgtgcaatggtttctcataaaagtttgaatgctcgtcttgttcttaagtttgaatgtgaaaaggatgaagataactgtctcatttgac 10597779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 321 - 440
Target Start/End: Complemental strand, 10881733 - 10881613
Alignment:
Q  321 ttgtatttgatactacatagaaaatcaattcttatgaaatgacatttagaatttttgtaggcatgaatagttatggaaagactatac-attaggatgtgc 419  Q
    ||||||||||||||||||| || |||||||||||||||||| ||||||  |||| ||| || || ||| || |||||||||||||||  || ||||||||    
T  10881733 ttgtatttgatactacatacaagatcaattcttatgaaatgccatttacgatttgtgttggtattaattgtcatggaaagactatactttttggatgtgc 10881634  T
Q  420 actcttatagaataaaacaat 440  Q
    ||| ||| ||||| |||||||    
T  10881633 acttttacagaatgaaacaat 10881613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 594 - 709
Target Start/End: Complemental strand, 10881470 - 10881355
Alignment:
Q  594 tgatgaagaagccaccaaagactatattaactgttcaaaatccttggatgaatgatgaaatctcaaatgaattgccatcaacaaaacatagtttttgcat 693  Q
    ||||||||||| |||| |||| |||||||  || | || |||| ||||||||  | | ||||||||| || ||||||| | |||||||||||||||||||    
T  10881470 tgatgaagaagtcaccgaagattatattagttgattaagatccatggatgaaataagcaatctcaaaagacttgccataagcaaaacatagtttttgcat 10881371  T
Q  694 atgacacataactttt 709  Q
    ||| ||||| ||||||    
T  10881370 atggcacatcactttt 10881355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 600 - 701
Target Start/End: Original strand, 10880383 - 10880484
Alignment:
Q  600 agaagccaccaaagactatattaactgttcaaaatccttggatgaatgatgaaatctcaaatgaattgccatcaacaaaacatagtttttgcatatgaca 699  Q
    ||||| |||| |||||||||||||||  |||| |||| |||||||  || | ||||||||| || || | |||||| |||||||||||||||||||| ||    
T  10880383 agaagtcaccgaagactatattaactaatcaagatccatggatgatagaagcaatctcaaaagactttctatcaactaaacatagtttttgcatatggca 10880482  T
Q  700 ca 701  Q
    ||    
T  10880483 ca 10880484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 660
Target Start/End: Original strand, 19473104 - 19473172
Alignment:
Q  592 tttgatgaagaagccaccaaagactatattaactgttcaaaatccttggatgaatgatgaaatctcaaa 660  Q
    ||||||||||||  |||||||||| |||||||| | ||||||||| |||||||| || | |||||||||    
T  19473104 tttgatgaagaaatcaccaaagacaatattaaccgatcaaaatccatggatgaaagaagcaatctcaaa 19473172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 709
Target Start/End: Complemental strand, 19473552 - 19473421
Alignment:
Q  578 tagacttttgtatatttgatgaagaagccaccaaagactatattaactgttcaaaatccttggatgaatgatgaaatctcaaatgaattgccatcaacaa 677  Q
    ||||| ||| ||| ||||||||| |||  ||  |||||||||||||||  |||| || | |||||||| || | ||||||||| || ||| | | ||||     
T  19473552 tagacatttatatctttgatgaataagttactgaagactatattaacttatcaagattcatggatgaaagaagcaatctcaaaagacttgtcgttaacat 19473453  T
Q  678 aacatagtttttgcatatgacacataactttt 709  Q
    ||||||| ||||||||||| ||||| ||||||    
T  19473452 aacatagcttttgcatatggcacattactttt 19473421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 321 - 708
Target Start/End: Complemental strand, 23271509 - 23271112
Alignment:
Q  321 ttgtatttgatactacatagaaaatcaattcttatgaaatgacatttagaatttttgtaggcatgaatagttatggaaagactatacatta-ggatgtgc 419  Q
    ||||||||||||||||||| ||  ||||||||||||||||| ||||| | |||||||| || ||||||| | ||||||||||||||| ||  ||||||||    
T  23271509 ttgtatttgatactacatataaggtcaattcttatgaaatgccatttgggatttttgtgggtatgaataatcatggaaagactatactttttggatgtgc 23271410  T
Q  420 actcttatagaataaaacaatgtttgctttttgttggtcagtgaag-taactatttcttacatattttttc------------atttgattatatgatct 506  Q
    |||||||  |||  ||    ||| ||| |||||||||  | ||||| ||||||||||| | |||| ||||             ||||||||||||| ||     
T  23271409 actcttacggaacgaacatgtgtctgcattttgttggctaatgaaggtaactatttctcaaatatctttttgattaaaaaaatatttgattatatgttcc 23271310  T
Q  507 tttttggtatacatatataggcttctcatttttaattaataacgaaaatttgattgcttttaacttttctatagacttttgtatatttgatgaagaagcc 606  Q
    ||| |||||| |||||    ||||||| | ||||||||| |  |||||| | | ||||||||| || ||||||||||||| ||| |||||||||||||||    
T  23271309 tttctggtatgcatat----gcttctcgtctttaattaacatagaaaatctaaatgcttttaaattctctatagacttttatatctttgatgaagaagcc 23271214  T
Q  607 accaaagactatattaactgttcaaaatccttggatgaatgatgaaatctcaaatgaattgccatcaacaaaacatagtttttgcatatgacacataact 706  Q
    ||||| ||||||| |||| | |||| |||| |||||||| || | ||||||||| || || ||||| |||||||||||||| |||||||| |||||||||    
T  23271213 accaatgactatactaaccgatcaagatccatggatgaaagaagcaatctcaaaagattttccatcgacaaaacatagtttctgcatatggcacataact 23271114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 321 - 708
Target Start/End: Complemental strand, 44680269 - 44679872
Alignment:
Q  321 ttgtatttgatactacatagaaaatcaattcttatgaaatgacatttagaatttttgtaggcatgaatagttatggaaagactatacatta-ggatgtgc 419  Q
    ||||||||||||||||||| ||  ||||||||||||||||| ||||| | |||||||| || ||||||| | ||||||||||||||| ||  ||||||||    
T  44680269 ttgtatttgatactacatacaaggtcaattcttatgaaatgccatttgggatttttgtgggtatgaataatcatggaaagactatactttttggatgtgc 44680170  T
Q  420 actcttatagaataaaacaatgtttgctttttgttggtcagtgaag-taactatttcttacatattttttc------------atttgattatatgatct 506  Q
    |||||||  |||  ||||| ||| ||| ||| |||||  | ||||| ||||||||||| | |||| ||||             |||||||||||||  |     
T  44680169 actcttacggaacgaaacagtgtatgcatttcgttggctaatgaaggtaactatttctcaaatatcttttttattaaacaaatatttgattatatgtccc 44680070  T
Q  507 tttttggtatacatatataggcttctcatttttaattaataacgaaaatttgattgcttttaacttttctatagacttttgtatatttgatgaagaagcc 606  Q
    ||| |||||| |||||    ||||||| | ||||||||| |  || ||| | | ||||||||| || ||||||||||||| ||| |||||||||||||||    
T  44680069 tttctggtatgcatat----gcttctcgtctttaattaacatagataatctaaatgcttttaaattctctatagacttttatatctttgatgaagaagcc 44679974  T
Q  607 accaaagactatattaactgttcaaaatccttggatgaatgatgaaatctcaaatgaattgccatcaacaaaacatagtttttgcatatgacacataact 706  Q
    ||||| ||||||| |||| | |||| |||| |||||||| || | ||||||||| || || ||||| |||||||||||||| |||||||| |||||||||    
T  44679973 accaacgactatactaaccgatcaagatccatggatgaaagaagcaatctcaaaagagtttccatcgacaaaacatagtttctgcatatggcacataact 44679874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 4e-40; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 482 - 703
Target Start/End: Complemental strand, 18615758 - 18615542
Alignment:
Q  482 attttttcatttgattatatgatcttttttggtatacatatataggcttctcatttttaattaataacgaaaatttgattgcttttaacttttctataga 581  Q
    ||||| |||||||||||||||||| |||||  |||||||||    ||||||| ||||||||||||||||||||| | |  |||||||| |||||| ||||    
T  18615758 attttatcatttgattatatgatccttttttatatacatat----gcttctcgtttttaattaataacgaaaatct-agcgcttttaaattttctttaga 18615664  T
Q  582 cttttgtatatttgatgaagaagccaccaaagactatattaactgttcaaaatccttggatgaatgatgaaatctcaaatgaattgccatcaacaaaaca 681  Q
    | ||| ||| |||||||||||||||||| |||||||||||||| | |||| |||  |||||||| || | ||||||||| || ||| |||||||||||||    
T  18615663 catttatatctttgatgaagaagccaccgaagactatattaaccgatcaagatcaatggatgaaagaagcaatctcaaaagagttgtcatcaacaaaaca 18615564  T
Q  682 tagtttttgcatatgacacata 703  Q
     ||||| |||||||| ||||||    
T  18615563 cagtttctgcatatgccacata 18615542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 321 - 426
Target Start/End: Original strand, 14198161 - 14198267
Alignment:
Q  321 ttgtatttgatactacatagaaaatcaattcttatgaaatgacatttagaatttttgtaggcatgaatagttatggaaagactatac-attaggatgtgc 419  Q
    ||||||||||||||||||| ||  ||||||||||||||||| ||||| | |||||||| |  ||||||| |||||||||||||||||  || ||||||||    
T  14198161 ttgtatttgatactacatacaaggtcaattcttatgaaatgccatttgggatttttgtggatatgaataattatggaaagactatactttttggatgtgc 14198260  T
Q  420 actctta 426  Q
    |||||||    
T  14198261 actctta 14198267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 582 - 708
Target Start/End: Original strand, 14198379 - 14198505
Alignment:
Q  582 cttttgtatatttgatgaagaagccaccaaagactatattaactgttcaaaatccttggatgaatgatgaaatctcaaatgaattgccatcaacaaaaca 681  Q
    ||||| ||| |||||||||||||||||||| ||||||| ||||   |||| |||| |||||||| || | ||||||||| || || ||||| | ||||||    
T  14198379 cttttatatctttgatgaagaagccaccaacgactatactaaccaatcaagatccatggatgaaagaagcaatctcaaaagagtttccatcgaaaaaaca 14198478  T
Q  682 tagtttttgcatatgacacataacttt 708  Q
    |||||| || ||||| |||||||||||    
T  14198479 tagtttctggatatggcacataacttt 14198505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 321 - 426
Target Start/End: Complemental strand, 18615931 - 18615825
Alignment:
Q  321 ttgtatttgatactacatagaaaatcaattcttatgaaatgacatttagaatttttgtaggcatgaatagttatggaaagactatac-attaggatgtgc 419  Q
    ||||||||||||||||||| ||  ||||||||||||||||| ||||| |||||||||| || ||||||| | ||||||||||  |||  || ||||||||    
T  18615931 ttgtatttgatactacatacaaggtcaattcttatgaaatgtcatttggaatttttgtgggtatgaataatcatggaaagaccgtactttttggatgtgc 18615832  T
Q  420 actctta 426  Q
    |||||||    
T  18615831 actctta 18615825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 24750487 - 24750424
Alignment:
Q  8 acatatttgtgcaatggtttctcagaaaagtttgaatgctcgtc-ttgttcttaagtttgaatgt 71  Q
    |||||||||||||||  |||||||||||| |||||||| || || |||||| |||||||||||||    
T  24750487 acatatttgtgcaata-tttctcagaaaactttgaatgttcatcattgttcataagtttgaatgt 24750424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 561 - 708
Target Start/End: Original strand, 2482404 - 2482551
Alignment:
Q  561 tgcttttaacttttctatagacttttgtatatttgatgaagaagccaccaaagactatattaactgttcaaaatccttggatgaatgatgaaatctcaaa 660  Q
    ||||||||| || ||||||||||||| ||| |||||||||||||||||||| ||||||| |||| | |||| |||| |||||||| || | |||||||||    
T  2482404 tgcttttaaattctctatagacttttatatctttgatgaagaagccaccaacgactatactaaccgatcaagatccatggatgaaagaagcaatctcaaa 2482503  T
Q  661 tgaattgccatcaacaaaacatagtttttgcatatgacacataacttt 708  Q
     || || ||||| |||||||||||||| |||||||| |||||||||||    
T  2482504 agagtttccatcgacaaaacatagtttctgcatatggcacataacttt 2482551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 321 - 426
Target Start/End: Original strand, 2482169 - 2482275
Alignment:
Q  321 ttgtatttgatactacatagaaaatcaattcttatgaaatgacatttagaatttttgtaggcatgaatagttatggaaagactatac-attaggatgtgc 419  Q
    |||| |||||||||||||| ||  | ||||||||||||||| ||||| | |||||||| || ||||||| | ||||||||||| |||  || ||||||||    
T  2482169 ttgtgtttgatactacatacaaggttaattcttatgaaatgccatttgggatttttgtgggtatgaataatcatggaaagactgtactttttggatgtgc 2482268  T
Q  420 actctta 426  Q
    |||||||    
T  2482269 actctta 2482275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 561 - 708
Target Start/End: Complemental strand, 27107420 - 27107273
Alignment:
Q  561 tgcttttaacttttctatagacttttgtatatttgatgaagaagccaccaaagactatattaactgttcaaaatccttggatgaatgatgaaatctcaaa 660  Q
    ||||||||| || ||||||||||||| ||| |||||||||||||||||||| ||||||| |||| | |||| |||| |||||||| || | |||||||||    
T  27107420 tgcttttaaattctctatagacttttatatctttgatgaagaagccaccaacgactatactaaccgatcaagatccatggatgaaagaagcaatctcaaa 27107321  T
Q  661 tgaattgccatcaacaaaacatagtttttgcatatgacacataacttt 708  Q
     || || ||||| |||||||||||||| |||||||| |||||||||||    
T  27107320 agagtttccatcgacaaaacatagtttctgcatatggcacataacttt 27107273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 527 - 708
Target Start/End: Complemental strand, 12631736 - 12631555
Alignment:
Q  527 gcttctcatttttaattaataacgaaaatttgattgcttttaacttttctatagacttttgtatatttgatgaagaagccaccaaagactatattaactg 626  Q
    ||||||| | ||||||||| |  |||||| | | ||||||||| || ||||||||||||| ||| ||||||||| |||||||||  ||||||| |||| |    
T  12631736 gcttctcgtctttaattaacatagaaaatctaaatgcttttaaattctctatagacttttatatctttgatgaataagccaccatcgactatactaaccg 12631637  T
Q  627 ttcaaaatccttggatgaatgatgaaatctcaaatgaattgccatcaacaaaacatagtttttgcatatgacacataacttt 708  Q
     |||| |||| |||||||| || | ||||||||| || || ||||| |||||||||||||| |||||||| |||||||||||    
T  12631636 atcaagatccatggatgaaagaagtaatctcaaaagagtttccatcgacaaaacatagtttctgcatatggcacataacttt 12631555  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 321 - 426
Target Start/End: Complemental strand, 27107655 - 27107549
Alignment:
Q  321 ttgtatttgatactacatagaaaatcaattcttatgaaatgacatttagaatttttgtaggcatgaatagttatggaaagactatac-attaggatgtgc 419  Q
    |||| |||||||||||||| ||  | ||||||||||||||| ||||| | |||||||| || ||||||| | ||||||||||| |||  || ||||||||    
T  27107655 ttgtgtttgatactacatacaaggttaattcttatgaaatgccatttgggatttttgtgggtatgaataatcatggaaagactgtactttttggatgtgc 27107556  T
Q  420 actctta 426  Q
    |||||||    
T  27107555 actctta 27107549  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 12631949 - 12631865
Alignment:
Q  321 ttgtatttgatactacatagaaaatcaattcttatgaaatgacattt-agaatttttgtaggcatgaatagttatggaaagacta 404  Q
    ||||||||||||||||||| ||  ||||||||||||||||| |||||  || ||||||  || ||||||| | ||||||||||||    
T  12631949 ttgtatttgatactacatacaaggtcaattcttatgaaatgccatttgggattttttgcgggtatgaataatcatggaaagacta 12631865  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 56368026 - 56367953
Alignment:
Q  24 gtttctcagaaaagtttgaatgctcgtcttgttcttaagtttgaatgtgaaaaggatgaagataactgtctcat 97  Q
    |||||||||||| ||||||||  |  |  ||||| ||||||||||||| |||| ||||||||||||| ||||||    
T  56368026 gtttctcagaaaggtttgaatatttatggtgttcataagtttgaatgtaaaaaagatgaagataactatctcat 56367953  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 23355206 - 23355248
Alignment:
Q  201 atcaaatcacacatacatttcttgtcactcgtttctcgctatg 243  Q
    |||||||||||||||||||| |||| |||||||| ||||||||    
T  23355206 atcaaatcacacatacattttttgttactcgtttttcgctatg 23355248  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 113983 - 113946
Alignment:
Q  8 acatatttgtgcaatggtttctcagaaaagtttgaatg 45  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  113983 acatatttgtgcaatagtttctcaaaaaagtttgaatg 113946  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 13511789 - 13511834
Alignment:
Q  294 ttgattggtataaaaaatataatgatattgtatttgatactacata 339  Q
    ||||||||||||||||||||  |||| |||| ||||||||||||||    
T  13511789 ttgattggtataaaaaatatggtgatgttgtgtttgatactacata 13511834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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