View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-21 (Length: 741)
Name: NF0075-INSERTION-21
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-21 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 328 - 712
Target Start/End: Complemental strand, 1855795 - 1855407
Alignment:
| Q |
328 |
ttgggtattcgatcatccaaccccttcaaaatatgggatcttatcggaagctagttttcgatagtgtattagaatatgatattcaaaattagttttttat |
427 |
Q |
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| T |
1855795 |
ttgggtattcgatcatccaaccccttcaaaatatgggatcttatcggaagctagttttcgatagtgtattagaatacgatattcaaaattagtttttcat |
1855696 |
T |
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| Q |
428 |
agtatattttgagatattaaatattttaaggggaaatgagtaatcgccaaaaatttggtgggatttatgaccc-ccacgtttctcacgcatccttttaat |
526 |
Q |
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| T |
1855695 |
agtattttttgagatat-aaatattttaaggggaaatgagtaatcgccaaaaatttggtgggatttatgaccctccacgtttctcacgtgcccttttaat |
1855597 |
T |
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| Q |
527 |
ttttccattttacatcctggttgaactatatagtttgaaacttaaaaatacgtttaggatttgcttacaactaaaaataatagcatgttagcccaattcg |
626 |
Q |
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| T |
1855596 |
ttttccattttacatcctggttgaactatatagtttgaaacttaaaaatacgtttaggatttgcttacaactaaaaataatagcatgttagcccaattcg |
1855497 |
T |
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| Q |
627 |
gcaaagaa-gcgattaaaccgttagttgaggaagcctcccatccgat--gagcttatacaatgctagagctgcc-agcgaggaagctgat |
712 |
Q |
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| T |
1855496 |
gcaaagaaggcgattaaaccgttagttgaggaagcctcccatccgattgaagcttatacaatgctagagctgccaagcgaggaagctgat |
1855407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 1856165 - 1855976
Alignment:
| Q |
10 |
cagtactgttatacattcaattatgcatccaatatgacttcaaattgaaggtattgtcttcttgtttttatcaaaggcaacgaatttttattgtttttat |
109 |
Q |
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| T |
1856165 |
cagtactgttatacattcaattatgcatccaataagacttcaaattgaaggtattgtcttcttgtttttatcaaaggcaacgaatttttattgtttttat |
1856066 |
T |
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| Q |
110 |
tcccaaaatttaagagtgtaacataagcaccactcagaaaagagtgtagtgaaagc------aataataatgaattgaaatcattgtcgacg |
195 |
Q |
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| T |
1856065 |
tcccaaaattta--agtgtaacataagcaccactcagaaaagagtgtagtgaaagcaataataataataatgaattgaaatcattgtcgacg |
1855976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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