View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-22 (Length: 769)
Name: NF0075-INSERTION-22
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-22 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 695; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 7 - 769
Target Start/End: Original strand, 27160348 - 27161110
Alignment:
| Q |
7 |
atatttatgcacttaactattagaatttagacccttacctcaaccataagaatgttcagaactttgccatcaaatgtggtcatgtttgcacttaacacat |
106 |
Q |
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| T |
27160348 |
atatttatgcacttaactattagaatttagacccttacctcaaccataagaatgttcagaactttgccatcaaatgtggtcatgtttgcacttaacacat |
27160447 |
T |
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| Q |
107 |
gcagtccatatgaatctattgctttcatcaaccttgaaaacacaccttgcttctgctcacagcacaacttaatcatgaaatcttttccggcgatatgatt |
206 |
Q |
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| T |
27160448 |
gcagtccatatgaatctattgctttcatcaaccttgaaaacacaccttgcttctgctcacagcacaacttaatcatgaaatcttttccggcgatatgatt |
27160547 |
T |
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| Q |
207 |
cacttctacttgcaactaagaaaatattaaaagattatattaggtgtccaagaaaagaagcaataaaattcagtttcatgatccatgacatagtnnnnnn |
306 |
Q |
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| T |
27160548 |
cacttctacttgcaactaagaaaatattaaaagattatattaggtgtccaagaaaagaagcaataaaattcagtttcatgatccatgacatagtaaaaaa |
27160647 |
T |
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| Q |
307 |
nncaatgaaactgttattatgcacattttgtgtacctccatctgtgtctttctagtggaatcagacgaacattgattaagatcaatgagaggtaggtttc |
406 |
Q |
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| T |
27160648 |
a-caatgaaactgttattgtgcacattttgtgtacctccatctgtgtctttctagtggaatcagacgaacattgattaagatcaatgagaggtaggtttc |
27160746 |
T |
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| Q |
407 |
tggttccttctgcaagttctttgtctttctcacagtcctcaatttctaaagccttgatctcttcttgaagttccgtctcttgcctctgcaattccattat |
506 |
Q |
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| T |
27160747 |
tggttccttctgcaagttctttgtctttctcacagtcctcaacttctaaagccttgacctcttcttgaagttccgtctcttgcctctgcaattccattat |
27160846 |
T |
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| Q |
507 |
atattcaatcgcatcctcaagaattgctactctgtccatctgccaaaattgagacgattagatacttagtgcatgttcagatcaataatcaatttgacga |
606 |
Q |
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| T |
27160847 |
atattcaatcgcatcctcaagaattgctactctgtccatctgccaaaattgagacgattagatacctagtgcatgttcagatcaataatcaatttgacga |
27160946 |
T |
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| Q |
607 |
tataaagctgacaccgtaattttgttgaagcttcaaattataacttttgccaaaatcgtggtgatccaatg-aatttcagctaattcacggtcaaccaaa |
705 |
Q |
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| T |
27160947 |
tataaagctgacaccgtaattttgttgaagcttcaaagtataacttttgccaaaatcgtggtgatccaatgtaattttggctaattcaccgtcaaccaaa |
27161046 |
T |
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| Q |
706 |
cagacacttgtgcaaaattattagtgaaaagtattacattcatgctattgagttaaacaattta |
769 |
Q |
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| T |
27161047 |
cagacacttgtgcaaaattattagtgaaaagtattacattcatgctattgagttaaacaattta |
27161110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 27171096 - 27171173
Alignment:
| Q |
6 |
catatttatgcacttaactattagaatttagacccttacctcaaccataagaatgttcagaactttgccatcaaatgt |
83 |
Q |
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| T |
27171096 |
catatttatacacttcactgttatgatttagacccttgcctcaaccattagaatgttcaggactttgccatcaaatgt |
27171173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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