View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0075-INSERTION-23 (Length: 699)

Name: NF0075-INSERTION-23
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0075-INSERTION-23
NF0075-INSERTION-23
[»] scaffold1526 (5 HSPs)
scaffold1526 (276-470)||(496-690)
scaffold1526 (496-684)||(291-479)
scaffold1526 (113-239)||(727-853)
scaffold1526 (8-48)||(942-982)
scaffold1526 (112-153)||(837-878)
[»] chr8 (4 HSPs)
chr8 (276-470)||(44496089-44496283)
chr8 (112-239)||(44495925-44496052)
chr8 (496-684)||(44496300-44496489)
chr8 (8-48)||(44495821-44495861)
[»] chr2 (5 HSPs)
chr2 (496-684)||(3379033-3379221)
chr2 (276-470)||(3378841-3379017)
chr2 (113-239)||(3378678-3378804)
chr2 (8-48)||(3378549-3378589)
chr2 (112-153)||(3378653-3378694)
[»] scaffold0016 (5 HSPs)
scaffold0016 (280-470)||(53182-53365)
scaffold0016 (496-684)||(52975-53162)
scaffold0016 (112-166)||(53534-53588)
scaffold0016 (8-48)||(53652-53692)
scaffold0016 (183-216)||(53461-53494)
[»] scaffold0642 (5 HSPs)
scaffold0642 (112-239)||(4523-4650)
scaffold0642 (513-684)||(4832-5004)
scaffold0642 (376-470)||(4731-4825)
scaffold0642 (276-315)||(4687-4726)
scaffold0642 (8-48)||(4419-4459)
[»] scaffold0345 (5 HSPs)
scaffold0345 (112-239)||(14435-14562)
scaffold0345 (513-684)||(14745-14917)
scaffold0345 (376-470)||(14643-14737)
scaffold0345 (276-315)||(14599-14638)
scaffold0345 (8-48)||(14331-14371)
[»] scaffold0105 (5 HSPs)
scaffold0105 (112-239)||(24419-24546)
scaffold0105 (513-684)||(24064-24236)
scaffold0105 (376-470)||(24244-24338)
scaffold0105 (276-315)||(24343-24382)
scaffold0105 (8-48)||(24610-24650)
[»] chr4 (6 HSPs)
chr4 (343-427)||(28335593-28335677)
chr4 (343-427)||(44787548-44787632)
chr4 (543-585)||(28335417-28335459)
chr4 (543-585)||(44787372-44787414)
chr4 (422-463)||(28335530-28335571)
chr4 (422-463)||(44787485-44787526)


Alignment Details
Target: scaffold1526 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 276 - 470
Target Start/End: Complemental strand, 690 - 496
Alignment:
Q  276 atacttatctctattcttgactgactcctctttgttgttgatatctaagctctaagttgatatctaggtaaccaatgatggtttgatttaatcatatgtg 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  690 atacttatctctattcttgactgactcctctttgttgttgatatctaagctctaagttgatatctaggtaaccaatgatggtttgatttaatcatatgtg 591  T
Q  376 ttttattctttgctttccttcacattttatgagtcttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcgcacc 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  590 ttttattctttgctttccttcacattttatgagtcttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcgcacc 496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 496 - 684
Target Start/End: Complemental strand, 479 - 291
Alignment:
Q  496 atgttaacaaaactcaatttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaattt 595  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  479 atgtttacaaaactcaatttcctcggttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcattt 380  T
Q  596 caagttatggattgttttccttgannnnnnnnnnctttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt 684  Q
    ||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  379 caagttatggattgttttccttgatttttttttcttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgt 291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 853 - 727
Alignment:
Q  113 agcttgaaaatgaaaatgttttgcagcttgaaaatgaaaatattgaattcttttattttgatcagctctatgacgggtcatactaatttagaaatttaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  853 agcttgaaaatgaaaatgttttgcagcttgaaaatgaaaatattgaatttttttattttgatcagctctatgacgggtcatactaatttagaaatttaat 754  T
Q  213 gaataagttcaatttatcgatcttacc 239  Q
    |||||||||||||||||||||||||||    
T  753 gaataagttcaatttatcgatcttacc 727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 982 - 942
Alignment:
Q  8 ggatccgacccctccgcccctattacagttatggctactaa 48  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  982 ggatccgacccctccgcccctattacagttatggctactaa 942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 878 - 837
Alignment:
Q  112 tagcttgaaaatgaaaatgttttgcagcttgaaaatgaaaat 153  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  878 tagcttgaaaataaaaatgttttgcagcttgaaaatgaaaat 837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 276 - 470
Target Start/End: Original strand, 44496089 - 44496283
Alignment:
Q  276 atacttatctctattcttgactgactcctctttgttgttgatatctaagctctaagttgatatctaggtaaccaatgatggtttgatttaatcatatgtg 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44496089 atacttatctctattcttgactgactcctctttgttgttgatatctaagctctaagttgatatctaggtaaccaatgatggtttgatttaatcatatgtg 44496188  T
Q  376 ttttattctttgctttccttcacattttatgagtcttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcgcacc 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44496189 ttttattctttgctttccttcacattttatgagtcttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcgcacc 44496283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 44495925 - 44496052
Alignment:
Q  112 tagcttgaaaatgaaaatgttttgcagcttgaaaatgaaaatattgaattcttttattttgatcagctctatgacgggtcatactaatttagaaatttaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44495925 tagcttgaaaatgaaaatgttttgcagcttgaaaatgaaaatattgaatttttttattttgatcagctctatgacgggtcatactaatttagaaatttaa 44496024  T
Q  212 tgaataagttcaatttatcgatcttacc 239  Q
    ||||||||||||||||||||||||||||    
T  44496025 tgaataagttcaatttatcgatcttacc 44496052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 496 - 684
Target Start/End: Original strand, 44496300 - 44496489
Alignment:
Q  496 atgttaacaaaactcaatttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaattt 595  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  44496300 atgtttacaaaactcaatttcctcggttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcattt 44496399  T
Q  596 caagttatggattgttttccttgannnnnnnnnnc-tttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt 684  Q
    ||| ||||||||||||||||||||          | |||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  44496400 caatttatggattgttttccttgaatttttttttcttttcaaacatccaatgtgtatttcaatggattatatataaatgtcatctttcgt 44496489  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 44495821 - 44495861
Alignment:
Q  8 ggatccgacccctccgcccctattacagttatggctactaa 48  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44495821 ggatccgacccctccgcccctattacagttatggctactaa 44495861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 5e-70; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 496 - 684
Target Start/End: Original strand, 3379033 - 3379221
Alignment:
Q  496 atgttaacaaaactcaatttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaattt 595  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  3379033 atgtttacaaaactcaatttcctcggttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcattt 3379132  T
Q  596 caagttatggattgttttccttgannnnnnnnnnctttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt 684  Q
    ||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3379133 caagttatggattgttttccttgatttttttttcttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgt 3379221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 276 - 470
Target Start/End: Original strand, 3378841 - 3379017
Alignment:
Q  276 atacttatctctattcttgactgactcctctttgttgttgatatctaagctctaagttgatatctaggtaaccaatgatggtttgatttaatcatatgtg 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||    
T  3378841 atacttatctctattcttgactgactcctctttgttgttgatatctaagctctaagttgatatctaggtaaccaatgatg------------------tg 3378922  T
Q  376 ttttattctttgctttccttcacattttatgagtcttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcgcacc 470  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3378923 ttttattatttgctttccttcacattttatgagtcttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcacacc 3379017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 3378678 - 3378804
Alignment:
Q  113 agcttgaaaatgaaaatgttttgcagcttgaaaatgaaaatattgaattcttttattttgatcagctctatgacgggtcatactaatttagaaatttaat 212  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378678 agcttgaaaatgaaaatgttttgcagcttgaaaatgaaaaaattgaatttttttattttgatcagctctatgacgggtcatactaatttagaaatttaat 3378777  T
Q  213 gaataagttcaatttatcgatcttacc 239  Q
    |||||||||||||||||||||||||||    
T  3378778 gaataagttcaatttatcgatcttacc 3378804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 3378549 - 3378589
Alignment:
Q  8 ggatccgacccctccgcccctattacagttatggctactaa 48  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3378549 ggatccgacccctccgcccctattacagttatggctactaa 3378589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 3378653 - 3378694
Alignment:
Q  112 tagcttgaaaatgaaaatgttttgcagcttgaaaatgaaaat 153  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  3378653 tagcttgaaaataaaaatgttttgcagcttgaaaatgaaaat 3378694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 133; Significance: 9e-69; HSPs: 5)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 280 - 470
Target Start/End: Complemental strand, 53365 - 53182
Alignment:
Q  280 ttatctctattcttgactgactcctctttgttgttgatatctaagctctaagttgatatctaggtaaccaatgatggtttgatttaatcatatgtgtttt 379  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||       || ||||||||||||| |||||||||||||||||||||||||    
T  53365 ttatctctgttcttgactggctcctctttgttgttgatatctaagctctaa-------tccaggtaaccaatgacggtttgatttaatcatatgtgtttt 53273  T
Q  380 attctttgctttccttcacattttatgagtcttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcgcacc 470  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||    
T  53272 attctttgatttccttcacattttatgagtcttactaacctaatttgattacccttcagcaaaatttggactttgcaccttcatgcacacc 53182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 496 - 684
Target Start/End: Complemental strand, 53162 - 52975
Alignment:
Q  496 atgttaacaaaactcaatttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaattt 595  Q
    ||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  53162 atgtttacaaaactcaatttcctcggttgtgtaacgattaagttatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcattt 53063  T
Q  596 caagttatggattgttttccttgannnnnnnnnnctttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt 684  Q
    ||||||||||||||||||||||||          | |||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  53062 caagttatggattgttttccttgattttttttttc-ttcaaacatccaatgtgtattttaatggattatatgtaaatgtcatctttcgt 52975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 53588 - 53534
Alignment:
Q  112 tagcttgaaaatgaaaatgttttgcagcttgaaaatgaaaatattgaattctttt 166  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  53588 tagcttgaaaatgaaaatgttttgcagcttgaaaatgaaaaaattgaattttttt 53534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 53692 - 53652
Alignment:
Q  8 ggatccgacccctccgcccctattacagttatggctactaa 48  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53692 ggatccgacccctccgcccctattacagttatggctactaa 53652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 53494 - 53461
Alignment:
Q  183 tgacgggtcatactaatttagaaatttaatgaat 216  Q
    |||| |||||||||||||||||||||||||||||    
T  53494 tgactggtcatactaatttagaaatttaatgaat 53461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 116; Significance: 1e-58; HSPs: 5)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 4523 - 4650
Alignment:
Q  112 tagcttgaaaatgaaaatgttttgcagcttgaaaatgaaaatattgaattcttttattttgatcagctctatgacgggtcatactaatttagaaatttaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4523 tagcttgaaaatgaaaatgttttgcagcttgaaaatgaaaaaattgaatttttttattttgatcagctctatgacgggtcatacgaatttagaaatttaa 4622  T
Q  212 tgaataagttcaatttatcgatcttacc 239  Q
    ||||||||||||||||||||||||||||    
T  4623 tgaataagttcaatttatcgatcttacc 4650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 513 - 684
Target Start/End: Original strand, 4832 - 5004
Alignment:
Q  513 tttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaatttcaagttatggattgttt 612  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  4832 tttcctcggttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcatttcatgttatggattgttt 4931  T
Q  613 tccttgannnnnnnnnnc-tttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt 684  Q
    |||||||          | |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4932 tccttgattttttttttcttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgt 5004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 376 - 470
Target Start/End: Original strand, 4731 - 4825
Alignment:
Q  376 ttttattctttgctttccttcacattttatgagtcttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcgcacc 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4731 ttttattctttgctttccttcacattttatgagtcttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcacacc 4825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 4687 - 4726
Alignment:
Q  276 atacttatctctattcttgactgactcctctttgttgttg 315  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4687 atacttatctctattcttgactgactcctctttgttgttg 4726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 4419 - 4459
Alignment:
Q  8 ggatccgacccctccgcccctattacagttatggctactaa 48  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  4419 ggatccgacccctccgcccctattacagttattactactaa 4459  T

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Target: scaffold0345 (Bit Score: 116; Significance: 1e-58; HSPs: 5)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 14435 - 14562
Alignment:
Q  112 tagcttgaaaatgaaaatgttttgcagcttgaaaatgaaaatattgaattcttttattttgatcagctctatgacgggtcatactaatttagaaatttaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14435 tagcttgaaaatgaaaatgttttgcagcttgaaaatgaaaaaattgaatttttttattttgatcagctctatgacgggtcatacgaatttagaaatttaa 14534  T
Q  212 tgaataagttcaatttatcgatcttacc 239  Q
    ||||||||||||||||||||||||||||    
T  14535 tgaataagttcaatttatcgatcttacc 14562  T

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Target: scaffold0345; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 513 - 684
Target Start/End: Original strand, 14745 - 14917
Alignment:
Q  513 tttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaatttcaagttatggattgttt 612  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  14745 tttcctcggttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcatttcatgttatggattgttt 14844  T
Q  613 tccttg-annnnnnnnnnctttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt 684  Q
    |||||| |           |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14845 tccttgtatttttttttcttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgt 14917  T

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Target: scaffold0345; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 376 - 470
Target Start/End: Original strand, 14643 - 14737
Alignment:
Q  376 ttttattctttgctttccttcacattttatgagtcttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcgcacc 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14643 ttttattctttgctttccttcacattttatgagtcttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcacacc 14737  T

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Target: scaffold0345; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 14599 - 14638
Alignment:
Q  276 atacttatctctattcttgactgactcctctttgttgttg 315  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14599 atacttatctctattcttgactgactcctctttgttgttg 14638  T

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Target: scaffold0345; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 14331 - 14371
Alignment:
Q  8 ggatccgacccctccgcccctattacagttatggctactaa 48  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  14331 ggatccgacccctccgcccctattacagttattactactaa 14371  T

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Target: scaffold0105 (Bit Score: 116; Significance: 1e-58; HSPs: 5)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 24546 - 24419
Alignment:
Q  112 tagcttgaaaatgaaaatgttttgcagcttgaaaatgaaaatattgaattcttttattttgatcagctctatgacgggtcatactaatttagaaatttaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24546 tagcttgaaaatgaaaatgttttgcagcttgaaaatgaaaaaattgaatttttttattttgatcagctctatgacgggtcatacgaatttagaaatttaa 24447  T
Q  212 tgaataagttcaatttatcgatcttacc 239  Q
    ||||||||||||||||||||||||||||    
T  24446 tgaataagttcaatttatcgatcttacc 24419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 513 - 684
Target Start/End: Complemental strand, 24236 - 24064
Alignment:
Q  513 tttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaatttcaagttatggattgttt 612  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  24236 tttcctcggttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcatttcatgttatggattgttt 24137  T
Q  613 tccttgannnnnnnnnnc-tttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt 684  Q
    |||||||          | |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24136 tccttgattttttttttcttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgt 24064  T

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Target: scaffold0105; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 376 - 470
Target Start/End: Complemental strand, 24338 - 24244
Alignment:
Q  376 ttttattctttgctttccttcacattttatgagtcttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcgcacc 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24338 ttttattctttgctttccttcacattttatgagtcttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcacacc 24244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 24382 - 24343
Alignment:
Q  276 atacttatctctattcttgactgactcctctttgttgttg 315  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24382 atacttatctctattcttgactgactcctctttgttgttg 24343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 24650 - 24610
Alignment:
Q  8 ggatccgacccctccgcccctattacagttatggctactaa 48  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  24650 ggatccgacccctccgcccctattacagttattactactaa 24610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 343 - 427
Target Start/End: Complemental strand, 28335677 - 28335593
Alignment:
Q  343 gtaaccaatgatggtttgatttaatcatatgtgttttattctttgctttccttcacattttatgagtcttactaacctaatttga 427  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||    
T  28335677 gtaactaatgatggtttgatttaatcacatgtgttttattctttgcttttcctcacattttatgagtcttgctaacctaatttga 28335593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 343 - 427
Target Start/End: Complemental strand, 44787632 - 44787548
Alignment:
Q  343 gtaaccaatgatggtttgatttaatcatatgtgttttattctttgctttccttcacattttatgagtcttactaacctaatttga 427  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||    
T  44787632 gtaactaatgatggtttgatttaatcacatgtgttttattctttgcttttcctcacattttatgagtcttgctaacctaatttga 44787548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 585
Target Start/End: Complemental strand, 28335459 - 28335417
Alignment:
Q  543 tgtactgtgaagggcattgttagtatgcaagagccatgtcaat 585  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||    
T  28335459 tgtattgtgaagggcattgttagtatgcgagagccatgccaat 28335417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 585
Target Start/End: Complemental strand, 44787414 - 44787372
Alignment:
Q  543 tgtactgtgaagggcattgttagtatgcaagagccatgtcaat 585  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||    
T  44787414 tgtattgtgaagggcattgttagtatgcgagagccatgccaat 44787372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 28335571 - 28335530
Alignment:
Q  422 atttgattacccttcaacaaaatttggactttgcaacttcat 463  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||    
T  28335571 atttgattacccttcaacaaaattttgacattgcagcttcat 28335530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 44787526 - 44787485
Alignment:
Q  422 atttgattacccttcaacaaaatttggactttgcaacttcat 463  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||    
T  44787526 atttgattacccttcaacaaaattttgacattgcagcttcat 44787485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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