View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-24 (Length: 501)
Name: NF0075-INSERTION-24
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-24 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 144 - 475
Target Start/End: Original strand, 13619652 - 13619978
Alignment:
| Q |
144 |
ctgccaattgtttttcgttaatattgaatcaattcaaaataccctaatttgatccaagggtgnnnnnnntattttgaccaaaactttactttcctctcaa |
243 |
Q |
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| T |
13619652 |
ctgccaatggtttttctttaatattgaatcaattcaaaataccctaatttgatccaagggtgaaaacaatattttgaccaaaactttactttcctctcaa |
13619751 |
T |
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| Q |
244 |
tggaacttaaataagcttatctacnnnnnnnnnnnnnnngaacttaaataagcttacgaactaaaaatatttaaacttaactaaaattannnnnnnn--a |
341 |
Q |
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| T |
13619752 |
tagaacataa-taagcttatctaccaaaaaaaa------gaacttaaataagcttacgaactaaaaatgtttaaacttaactaaattttattttttttta |
13619844 |
T |
|
| Q |
342 |
agaaattaaaataggataaattaacaacggcggtaagagctcctcctaaactaaattttaacccgtgttcaatagatgttataagcaaaacacttaacta |
441 |
Q |
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| T |
13619845 |
agaaattaaaatggaataaattaacaacagcggtaagagctcctcctaaactaaattttaacccgtgttcaaaagatgttataagcaaaacacttaacta |
13619944 |
T |
|
| Q |
442 |
tatgtgtaaacttcgttgtaaagcatgtatataa |
475 |
Q |
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| T |
13619945 |
tatgtgtaaacttcgttgtaaagcatgcatataa |
13619978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 13619516 - 13619574
Alignment:
| Q |
8 |
caaattatcatgaagaaacgaaaataaaaatggtcctcttgctgtatgtactcctctag |
66 |
Q |
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| T |
13619516 |
caaattatcatgaagaaacgaaaataataatggtcctcttgctgtatgtactcctctag |
13619574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 6259027 - 6258995
Alignment:
| Q |
341 |
aagaaattaaaataggataaattaacaacggcg |
373 |
Q |
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| T |
6259027 |
aagaaattaaaataggatatattaacaacggcg |
6258995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 379
Target Start/End: Original strand, 31265694 - 31265732
Alignment:
| Q |
341 |
aagaaattaaaataggataaattaacaacggcggtaaga |
379 |
Q |
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| T |
31265694 |
aagaaattaaaatgggatatattaacaacggcggtaaga |
31265732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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