View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-25 (Length: 712)
Name: NF0075-INSERTION-25
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-25 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 277 - 712
Target Start/End: Complemental strand, 1429444 - 1429040
Alignment:
| Q |
277 |
gggtcaaccgtggagaaaataattaaatacgacattatgtaaaagaaaagaaaagttggattgcaatagaaacaagaagacaaggtcaaccagctagaaa |
376 |
Q |
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| T |
1429444 |
gggtcaaccatggagaaaataattaaatacgacattatgtaaaagaaaagaaaagttggattgcaatagaaacaagaagacaaggtcaaccagctagaaa |
1429345 |
T |
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| Q |
377 |
ttccaaaagtagtactttggactcaagtgaatattttagatgtaattaacaagcttgtattagtaaatgtcaaagtaatatgcaaaaataaacaataatg |
476 |
Q |
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| T |
1429344 |
ttccaaaagtagtacatt-------------------agatgtaattaacaagcttgtattagtcaatgtcaaagtaatatgcaaaaataaacaatagtg |
1429264 |
T |
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| Q |
477 |
gtcagtatgaatagcacatagaatatcacatttcctatttggaccctccactgttgcctaagtttgaagcttggtgaaacttttcaatcatttgtaatga |
576 |
Q |
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| T |
1429263 |
gtca------------catagaatatcacatttcctatttggaccctccactgttgcctaagtttgaagcttggtgaaacttttcaatcatttgtaatga |
1429176 |
T |
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| Q |
577 |
gttgaagcaatcaatcactgctaacaaaatgagaaaattgaaccaaacatttcctctgctactctttttcttcctacttgtgtaaacccttcagccatga |
676 |
Q |
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| T |
1429175 |
gttgaagcaatcaatcactgctaacaaaatgagaaaattgaaccaaacatttcctctgctactctttttcttcctacttgtgtaaacccttcagccatga |
1429076 |
T |
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| Q |
677 |
aagaataacttctgcacctttctcccatgaagtgtc |
712 |
Q |
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| T |
1429075 |
aagaataacttctgcacctttctcccatgaagtgtc |
1429040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 1429711 - 1429545
Alignment:
| Q |
18 |
tagtttttgacattttattgaagacaaattaatctatatgtaataa----ttagtagtagaataatttaaccttcatataaaaatgatcgtgactaattt |
113 |
Q |
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| T |
1429711 |
tagtttttgatattttattgatgacaaattaatctatatgtaataaataattagtagtagaataatttaaccttcatataaaaatgatcgtgactaattt |
1429612 |
T |
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| Q |
114 |
gggtctttactcttaaattattaccgtcagtattatattctttttactggtataaaccttcaatata |
180 |
Q |
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| T |
1429611 |
gggtctttactcttaaattattaccgtcagtattatattctttttactggtataaaccttcaatata |
1429545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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