View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0075-INSERTION-26 (Length: 758)

Name: NF0075-INSERTION-26
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0075-INSERTION-26
NF0075-INSERTION-26
[»] chr7 (15 HSPs)
chr7 (7-758)||(46705769-46706524)
chr7 (7-365)||(5303082-5303444)
chr7 (7-362)||(5315697-5316051)
chr7 (7-365)||(5284894-5285262)
chr7 (7-364)||(5288876-5289233)
chr7 (7-328)||(5310983-5311307)
chr7 (553-720)||(22599050-22599210)
chr7 (580-720)||(46132938-46133071)
chr7 (586-720)||(2755779-2755906)
chr7 (632-720)||(17897478-17897558)
chr7 (121-183)||(32530364-32530430)
chr7 (395-436)||(46133024-46133065)
chr7 (395-433)||(2755868-2755906)
chr7 (395-433)||(22599139-22599177)
chr7 (553-610)||(17897410-17897467)
[»] chr5 (13 HSPs)
chr5 (8-388)||(1505564-1505948)
chr5 (10-367)||(1492757-1493119)
chr5 (4-325)||(1482776-1483101)
chr5 (10-278)||(1487259-1487531)
chr5 (10-281)||(1499829-1500104)
chr5 (4-278)||(1478582-1478860)
chr5 (563-720)||(32294009-32294159)
chr5 (554-713)||(36778774-36778926)
chr5 (580-720)||(9672415-9672548)
chr5 (632-719)||(25823297-25823377)
chr5 (124-232)||(1509816-1509928)
chr5 (395-433)||(36778856-36778894)
chr5 (4-106)||(1509706-1509807)
[»] chr1 (7 HSPs)
chr1 (7-386)||(44129160-44129541)
chr1 (7-386)||(44133365-44133747)
chr1 (7-386)||(44141787-44142170)
chr1 (553-720)||(21040527-21040687)
chr1 (575-720)||(30634699-30634837)
chr1 (553-666)||(13697952-13698065)
chr1 (679-720)||(10510106-10510147)
[»] chr2 (3 HSPs)
chr2 (10-306)||(24163023-24163323)
chr2 (553-720)||(44747549-44747709)
chr2 (399-432)||(44747639-44747672)
[»] chr4 (5 HSPs)
chr4 (563-720)||(26762696-26762845)
chr4 (553-670)||(10663384-10663502)
chr4 (553-670)||(10877529-10877647)
chr4 (395-433)||(10663431-10663469)
chr4 (395-433)||(10877576-10877614)
[»] scaffold0945 (2 HSPs)
scaffold0945 (553-720)||(1546-1706)
scaffold0945 (395-433)||(1579-1617)
[»] chr8 (7 HSPs)
chr8 (567-720)||(11179116-11179262)
chr8 (563-720)||(35772098-35772248)
chr8 (553-716)||(36739688-36739844)
chr8 (569-718)||(27071970-27072111)
chr8 (395-433)||(11179135-11179173)
chr8 (395-433)||(36739773-36739811)
chr8 (395-433)||(27071987-27072025)
[»] chr3 (4 HSPs)
chr3 (553-720)||(987518-987678)
chr3 (10-60)||(37858847-37858897)
chr3 (398-433)||(987607-987642)
chr3 (679-720)||(42802623-42802664)
[»] scaffold0083 (2 HSPs)
scaffold0083 (553-720)||(3828-3986)
scaffold0083 (395-433)||(3916-3954)


Alignment Details
Target: chr7 (Bit Score: 679; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 7 - 758
Target Start/End: Complemental strand, 46706524 - 46705769
Alignment:
Q  7 atttctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatga 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46706524 atttctgattacaactcaatcttttggattgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatga 46706425  T
Q  107 gagccactagagaagtgcttagtgaatatggaaatatgtcaagtg----tgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggact 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  46706424 gagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggtct 46706325  T
Q  203 gaagataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttgtgcagtgtcgctatatgaaat 302  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  46706324 gaagacaacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccatagaaactgttgttttgcacagtgtcgctatatgaaat 46706225  T
Q  303 gcttaattattttatttttatttatcacttccaaatttgcttgatttttatgtaaggatgaaaaactcgtctacagttcaacatttttaaaatacaacgg 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46706224 gcttaattattttatttttatttatcacttccaaatttgcttgatttttatgtaaggatgaaaaactcgtctacagttcaacatttttaaaatacaacgg 46706125  T
Q  403 tcctgagagagttcacactcatcactttgaggtttaatatgtaaaaatatatcgtcaaaatgatacattttaatatgtatcaaatatattaaaccggtcc 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46706124 tcctgagagagttcacactcatcactttgaggtttaatatgtaaaaatatatcgtcaaaatgatacattttaatatgtatcaaatatattaaaccggtcc 46706025  T
Q  503 tgagttatttattctctgtagttatttatttgaaaaatgcatattaaaaatgtatttgtcaaagtgacaatgatggctatttttacaacggtcctgaaag 602  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  46706024 tgagttatttattctctatagttatttatttgaaaaatacatattaaaaatgtatttttcaaagtgacaatgatggttatttttacaacggtcctgaaag 46705925  T
Q  603 agttcacaatcatcactttgaggttgtctggcttaggcttagcatgagtagcaataaggagaaacaaagtcacaactcacaattaggaagtgtgcaccac 702  Q
    |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46705924 agttcacactcatcactttgaggttgtcaggcttaggcttagtatgagtagcaataaggagaaacaaagtcacaactcacaattagggagtgtgcaccac 46705825  T
Q  703 cttcacaagacaagaacaggaacaagataagtacatagttagttcacataatctaa 758  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46705824 cttcacaagacaagaacaagaacaagataagtacatagttagttcacataatctaa 46705769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 365
Target Start/End: Original strand, 5303082 - 5303444
Alignment:
Q  7 atttctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatga 106  Q
    ||||||||||||||||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||||||||| | |||||||||||||||||||    
T  5303082 atttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtagagcaaaagttatcattgaagcctgaaaagatga 5303181  T
Q  107 gagccactagagaagtgcttagtgaatatggaaatatgtcaagtg----tgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggact 202  Q
      || |||||||||||||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| |||||||  |    
T  5303182 atgcaactagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactaaagatgggtt 5303281  T
Q  203 gaagataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttgtgcagtgtcgctatatgaaat 302  Q
    ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||| ||||||||| ||||||||||||||||| ||    
T  5303282 gaagacaactggagaaggacttgaatggggtgtgttatttggttttggaccaggacttacaattgaaacggttgttttgcgcagtgtcgctatatgagat 5303381  T
Q  303 gcttaattattttatttttatttatcacttccaaatttgcttgatttttatgtaaggatgaaa 365  Q
    ||||||||||||| |||| || ||||| ||   |||||| || ||||||| ||||||||||||    
T  5303382 gcttaattattttgttttcatgtatcaattttcaatttgtttaatttttacgtaaggatgaaa 5303444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 362
Target Start/End: Original strand, 5315697 - 5316051
Alignment:
Q  7 atttctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatga 106  Q
    ||||||||||||||||||||||||||||| ||||| || ||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||    
T  5315697 atttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtggagcaaaagttagccttaaagcctgaaaagatga 5315796  T
Q  107 gagccactagagaagtgcttagtgaatatggaaatatgtcaagtg----tgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggact 202  Q
      || |||||||||||||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| |||| ||| |    
T  5315797 atgcaactagagaagtgctcagtgaatatggaaatatgtcaagtgcgtgtgttttgtttatcttagatgaaatgagaaagaaatcaactaaagacggatt 5315896  T
Q  203 gaagataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttgtgcagtgtcgctatatgaaat 302  Q
    ||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||| ||||||||| |||| || ||||||||| ||    
T  5315897 gaagacaacgggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaacggttgttttgcgcagcgtggctatatgagat 5315996  T
Q  303 gcttaattattttatttttatttatcacttccaaatttgcttgatttttatgtaaggatg 362  Q
    |||||     ||||||||||| ||||  || |||||||| || |||||||||||| ||||    
T  5315997 gctta-----tttatttttatgtatcgatttcaaatttgtttaatttttatgtaatgatg 5316051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 7 - 365
Target Start/End: Original strand, 5284894 - 5285262
Alignment:
Q  7 atttctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatga 106  Q
    ||||||||||||||||||||||||||||| ||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5284894 atttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtagagcaaaagttagccttgaagcctgaaaagatga 5284993  T
Q  107 gagccactagagaagtgcttagtgaatatggaaatatgtcaag----tgtgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggact 202  Q
      || || ||||||||||| |||||||||||||||||||||||    ||||||||||||||||| ||||||||||||||||||||||||||| | ||| |    
T  5284994 atgcaaccagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttggatgaaatgagaaagaaatcaactcaaaacggatt 5285093  T
Q  203 gaagataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttgtgcagtgtcgctatatgaaat 302  Q
    ||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||| ||||||||| ||||||| || |||||| ||    
T  5285094 gaagacaacgggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgagat 5285193  T
Q  303 gcttaattattttat------ttttatttatcacttccaaatttgcttgatttttatgtaaggatgaaa 365  Q
    |||||||| |||| |      ||| |||||||| ||   |||||| || ||||||||||||||||||||    
T  5285194 gcttaatttttttttcttttctttcatttatcaattttcaatttgtttaatttttatgtaaggatgaaa 5285262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 7 - 364
Target Start/End: Complemental strand, 5289233 - 5288876
Alignment:
Q  7 atttctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatga 106  Q
    ||||||||||||||||||||||||||||| ||||| || ||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||    
T  5289233 atttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtggagcaaaagttagccttaaagcctgaaaagatga 5289134  T
Q  107 gagccactagagaagtgcttagtgaatatggaaatatgtcaag----tgtgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggact 202  Q
      || |||||||||||||| |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||   ||| ||| |    
T  5289133 atgcaactagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaaccatagacggatt 5289034  T
Q  203 gaagataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttgtgcagtgtcgctatatgaaat 302  Q
    ||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||  | ||||| || |||||| ||    
T  5289033 gaagacaactggagaaggacttgaatggggtgtcttatttggttttggaccaggacttaccattgaaactgttgttttacgtagtgtggccatatgagat 5288934  T
Q  303 gcttaattattttatttttatttatcacttccaaatttgcttgatttttatgtaaggatgaa 364  Q
    | |||||||||||||||| ||| |    || |||||||| || | |||||||||||||||||    
T  5288933 gtttaattattttattttcattga----tttcaaatttgtttaacttttatgtaaggatgaa 5288876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 328
Target Start/End: Original strand, 5310983 - 5311307
Alignment:
Q  7 atttctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatga 106  Q
    ||||||||||||||||||||||||||||| ||||| || ||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  5310983 atttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatga 5311082  T
Q  107 gagccactagagaagtgcttagtgaatatggaaatatgtcaag----tgtgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggact 202  Q
      || |||||||||||||| |||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||| | ||| |    
T  5311083 atgcaactagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactcaaaacggatt 5311182  T
Q  203 gaagataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttgtgcagtgtcgctatatgaaat 302  Q
    ||||| ||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||| | ||| ||||||||| | |||||  | |||||| ||    
T  5311183 gaagacaacgggagaaggacttgagtggggtgtattatttggttttggaccaggacttaccattgaaacagttgttttgcgtagtgtgaccatatgagat 5311282  T
Q  303 gcttaattattttatttttatttatc 328  Q
    | |||| ||||||||||| |||||||    
T  5311283 gtttaa-tattttattttcatttatc 5311307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 553 - 720
Target Start/End: Complemental strand, 22599210 - 22599050
Alignment:
Q  553 tgtatttgtcaaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagta 652  Q
    ||||||| | ||||||||||| |||| |||||||||||||||| ||| ||| |||||| ||||||||||||| ||  | | |||||||||||||||||||    
T  22599210 tgtattttttaaagtgacaataatggttatttttacaacggtcttgagagaattcacactcatcactttgagtttaccagacttaggcttagcatgagta 22599111  T
Q  653 gcaataaggagaaacaaagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    |||||||||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||    
T  22599110 gcaataaggagaaacaaagtc-------acaattaagaagtgtgcaccaccttcacaagacaagaaca 22599050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 580 - 720
Target Start/End: Complemental strand, 46133071 - 46132938
Alignment:
Q  580 tatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagtagcaataaggagaaacaaagtcacaact 679  Q
    ||||||||||| |||||||| ||| |||||| ||||||||||||||||  | | |||||||||  |||||||| |||||| ||||||||       || |    
T  46133071 tatttttacaatggtcctgagagaattcacactcatcactttgaggttaccagacttaggctttacatgagtaccaataaagagaaaca-------aaat 46132979  T
Q  680 cacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  46132978 cacaattagggagtgtgcaccaccttcacaagacaagaaca 46132938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 586 - 720
Target Start/End: Complemental strand, 2755906 - 2755779
Alignment:
Q  586 tacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagtagcaataaggagaaacaaagtcacaactcacaat 685  Q
    ||||||| |||||| ||| |||||| ||||||||||||| ||  | ||||| | ||| |||||| |||||||||||| ||||||||||       |||||    
T  2755906 tacaacgatcctgagagaattcacactcatcactttgagtttaccaggctttgacttggcatgaatagcaataaggataaacaaagtc-------acaat 2755814  T
Q  686 taggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    || | ||||||||||||||||||||||||||||||    
T  2755813 tatggagtgtgcaccaccttcacaagacaagaaca 2755779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 632 - 720
Target Start/End: Original strand, 17897478 - 17897558
Alignment:
Q  632 ggcttaggcttagcatgagtagcaataaggagaaacaaagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    |||||| ||||||||||||||||||||| |||||||||||       ||||||||| | ||||| ||||||||||||||||||||||||    
T  17897478 ggcttaagcttagcatgagtagcaataa-gagaaacaaag-------tcacaattaaggagtgtacaccaccttcacaagacaagaaca 17897558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 32530430 - 32530364
Alignment:
Q  121 gtgcttagtgaatatggaaatatgtcaag----tgtgttttgtttatcttagatgaaatgagaaaga 183  Q
    |||||||||||||||||||||||||| ||    |||||||||||||| || ||||||||||||||||    
T  32530430 gtgcttagtgaatatggaaatatgtcgagtgcttgtgttttgtttattttggatgaaatgagaaaga 32530364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 46133065 - 46133024
Alignment:
Q  395 tacaacggtcctgagagagttcacactcatcactttgaggtt 436  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  46133065 tacaatggtcctgagagaattcacactcatcactttgaggtt 46133024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 395 - 433
Target Start/End: Complemental strand, 2755906 - 2755868
Alignment:
Q  395 tacaacggtcctgagagagttcacactcatcactttgag 433  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  2755906 tacaacgatcctgagagaattcacactcatcactttgag 2755868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 395 - 433
Target Start/End: Complemental strand, 22599177 - 22599139
Alignment:
Q  395 tacaacggtcctgagagagttcacactcatcactttgag 433  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  22599177 tacaacggtcttgagagaattcacactcatcactttgag 22599139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 610
Target Start/End: Original strand, 17897410 - 17897467
Alignment:
Q  553 tgtatttgtcaaagtgacaatgatggctatttttacaacggtcctgaaagagttcaca 610  Q
    ||||||| | |||||||||||  ||| |||||||||||||||||||| ||| ||||||    
T  17897410 tgtattttttaaagtgacaatagtggttatttttacaacggtcctgagagaattcaca 17897467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 388
Target Start/End: Original strand, 1505564 - 1505948
Alignment:
Q  8 tttctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatgag 107  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  1505564 tttctgactacaactcaatcttctggattgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaa 1505663  T
Q  108 agccactagagaagtgcttagtgaatatggaaatatgtcaagtg----tgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggactg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  1505664 agccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcagctcaagatggattg 1505763  T
Q  204 aagataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttgtgcagtgtcgctatatgaaatg 303  Q
    ||||  || |||||||||| |||||||||||||||||||||||||||||| |||||||| || | ||||||||||||| | ||||| ||||||||| |||    
T  1505764 aagactaccggagaaggacatgaatggggtgtgttatttggctttggaccgggacttactattgaaactgttgttttgcgtagtgttgctatatgagatg 1505863  T
Q  304 cttaattattttatttttatttatcacttccaaatttgcttgatttttatgtaaggatgaaaaactcgtctacagttcaacattt 388  Q
    ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| || || ||||||||||||    
T  1505864 cttaattattttattttcatatatcactttcaaatttgcttgatttttatgtaaggatgaaaaacttgtgtagagttcaacattt 1505948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 1492757 - 1493119
Alignment:
Q  10 tctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatgagag 109  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  1492757 tctgattacaactcaatcttttggattgcacaccctggtggacctgcaattttagaccaagtagagcaaaagttagccttaaagcccgaaaagatgagag 1492856  T
Q  110 ccactagagaagtgcttagtgaatatggaaatatgtcaag----tgtgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggactgaa 205  Q
    ||||  | || ||||| |||||||||||||||||||||||    ||||| ||||||||||| ||||||||||||||||||||||||||| ||||  ||||    
T  1492857 ccacacgggaggtgctaagtgaatatggaaatatgtcaagtgcatgtgtattgtttatcttggatgaaatgagaaagaaatcaactcaaaatggtttgaa 1492956  T
Q  206 gataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttgtgcagtgtcgctatatgaaatgct 305  Q
    || ||| |||||||| | ||||||||||||| |||| ||||||||||||||||||||||| |  |||||||| ||| ||||||| ||||||| | |||||    
T  1492957 gacaaccggagaagggcatgaatggggtgtgctattcggctttggaccaggacttaccattgagactgttgtcttgcgcagtgtagctatataagatgct 1493056  T
Q  306 taattat-tttatttttatttatcacttccaaatttgcttgatttttatgtaaggatgaaaaa 367  Q
    |||| || |||||||  |||||||||||  |||||||||| ||||||||||||||| ||||||    
T  1493057 taatcatatttatttccatttatcacttttaaatttgctttatttttatgtaaggaagaaaaa 1493119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 4 - 325
Target Start/End: Original strand, 1482776 - 1483101
Alignment:
Q  4 aacatttctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaaga 103  Q
    |||||||||||||||||||||||||||||||| || || || ||||| || |||||| | |||||||| || |||||||||| ||| || ||||||||||    
T  1482776 aacatttctgattacaactcaatcttttggattgctcatccaggtggacccgcaattcttgatcaagttgaacaaaagttaggcttaaaacctgaaaaga 1482875  T
Q  104 tgagagccactagagaagtgcttagtgaatatggaaatatgtcaag----tgtgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatgg 199  Q
    ||| ||||||||||||||| |||||||||||||| || ||||||||    ||||| ||||||||||||||||| ||| ||||||||||  ||||||| ||    
T  1482876 tgaaagccactagagaagtacttagtgaatatggtaacatgtcaagtgcatgtgtattgtttatcttagatgagatgcgaaagaaatcttctcaagaggg 1482975  T
Q  200 actgaagataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttgtgcagtgtcgctatatga 299  Q
     || ||||  ||||||||||| ||||| ||||||||||| || ||||||||||| ||||||||||| | ||| |||||||||  |||||| |||||||||    
T  1482976 gcttaagaccacaggagaagggcttgattggggtgtgttgttcggctttggacctggacttaccattgaaaccgttgttttgcacagtgtggctatatga 1483075  T
Q  300 aatgcttaattattttatttttattt 325  Q
     | ||||||||| |||||||| ||||    
T  1483076 taagcttaattagtttattttcattt 1483101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 10 - 278
Target Start/End: Original strand, 1487259 - 1487531
Alignment:
Q  10 tctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatgagag 109  Q
    |||||||||||  |||| |||||||| |  ||||| || || ||||||||||| || || || || ||||||||||| ||||| || ||||||||||  |    
T  1487259 tctgattacaatgcaattttttggattgtccacccaggcggacctgcaattttggaccatgttgaacaaaagttagctttgaaaccggaaaagatgaagg 1487358  T
Q  110 ccactagagaagtgcttagtgaatatggaaatatgtcaagtg----tgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggactgaa 205  Q
    ||||||| ||||| |||||||||||||| || ||||||||||    ||| |||||||| || |||||||||||||||| |||| ||||||| |||||  |    
T  1487359 ccactagggaagtacttagtgaatatggtaacatgtcaagtgcttgtgtattgtttatattggatgaaatgagaaagagatcagctcaagagggacttga 1487458  T
Q  206 gataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgtt 278  Q
    ||  ||||||||||||||| ||||||| ||||| || ||||||||||| ||||||||||| | ||||||||||    
T  1487459 gaccacaggagaaggacttaaatggggagtgttgttcggctttggacctggacttaccattgaaactgttgtt 1487531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 1499829 - 1500104
Alignment:
Q  10 tctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatgagag 109  Q
    |||||||| ||||||||||||||||| || || || ||||| ||||||||| |||||||| | ||||||||||||| ||||||  |||||||| |||| |    
T  1499829 tctgattataactcaatcttttggattgctcatccgggtggtcctgcaattctagatcaaattgagcaaaagttaggcttgaaagctgaaaagttgaggg 1499928  T
Q  110 ccactagagaagtgcttagtgaatatggaaatatgtcaagtg----tgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggactgaa 205  Q
     |  ||| |||||||||||||||||||| |||||||| ||||    ||| ||||| |||||  |||| ||||||| |||||| ||||||||| |||| ||    
T  1499929 tcgttagggaagtgcttagtgaatatggtaatatgtctagtgcatctgtattgttcatcttgaatgagatgagaaggaaatcgactcaagatcgacttaa 1500028  T
Q  206 gataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttg 281  Q
    ||  ||||| |||||||  ||||||||||| || ||  |||||||||| ||||||||||| | |||||||||||||    
T  1500029 gaccacaggtgaaggacaagaatggggtgtattgttaagctttggacctggacttaccattgaaactgttgttttg 1500104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 4 - 278
Target Start/End: Original strand, 1478582 - 1478860
Alignment:
Q  4 aacatttctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaaga 103  Q
    ||||| |||||||| || |||||||| ||||| || ||||| ||||| || |||||| |||| ||||| ||  ||||||||| ||| || |||||||| |    
T  1478582 aacatctctgattataattcaatcttctggattgctcacccaggtggacccgcaattctagaccaagttgaagaaaagttaggcttaaaacctgaaaaaa 1478681  T
Q  104 tgagagccactagagaagtgcttagtgaatatggaaatatgtcaag----tgtgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatgg 199  Q
    |||  |||||||| ||||| |||||||||||||| || ||||||||    ||||| ||||| ||||| ||||| ||||||||||||||  ||||||| ||    
T  1478682 tgaaggccactagggaagtacttagtgaatatggtaacatgtcaagcgcatgtgtattgttcatcttggatgagatgagaaagaaatcggctcaagaggg 1478781  T
Q  200 actgaagataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgtt 278  Q
    ||| || |  ||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| ||||| | ||| ||||||    
T  1478782 acttaaaaccacaggtgaaggccttgactggggtgtgttgtttggctttggacctggactcaccattgaaacagttgtt 1478860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 563 - 720
Target Start/End: Original strand, 32294009 - 32294159
Alignment:
Q  563 aaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagtagcaataagga 662  Q
    ||||||||||| |||| |||||||||||||||| ||| ||| |||||| |||||| |||||| || |  |||||||||||| ||||||||||||||||||    
T  32294009 aaagtgacaataatggttatttttacaacggtcatgagagaattcacactcatcattttgagtttattaggcttaggcttaacatgagtagcaataagga 32294108  T
Q  663 gaaacaaagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    |||||||||       ||||||||| | ||||||||||||||||||||||||||||||    
T  32294109 gaaacaaag-------tcacaattaaggagtgtgcaccaccttcacaagacaagaaca 32294159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 554 - 713
Target Start/End: Complemental strand, 36778926 - 36778774
Alignment:
Q  554 gtatttgtcaaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagtag 653  Q
    |||||| | ||||||||||| |||| |||||||||||||||||||| ||| |||||| ||||||||||||| ||  | | ||||||||||||||||| ||    
T  36778926 gtattttttaaagtgacaataatggttatttttacaacggtcctgagagaattcacactcatcactttgagtttaccagacttaggcttagcatgagaag 36778827  T
Q  654 caataaggagaaacaaagtcacaactcacaattaggaagtgtgcaccaccttcacaagac 713  Q
    |||||| |||||||||||||       ||||||| ||| |||||||||||||||||||||    
T  36778826 caataacgagaaacaaagtc-------acaattaagaaatgtgcaccaccttcacaagac 36778774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 580 - 720
Target Start/End: Original strand, 9672415 - 9672548
Alignment:
Q  580 tatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagtagcaataaggagaaacaaagtcacaact 679  Q
    ||||||||||| ||||| || ||| |||||| ||||||||||||| ||  | ||||||||||||||||||||||||||||||||||||||||       |    
T  9672415 tatttttacaatggtccagagagaattcacactcatcactttgagtttaccaggcttaggcttagcatgagtagcaataaggagaaacaaag-------t 9672507  T
Q  680 cacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    ||| |||| | ||||||||||||||||||||||||||||||    
T  9672508 cacgattaaggagtgtgcaccaccttcacaagacaagaaca 9672548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 632 - 719
Target Start/End: Complemental strand, 25823377 - 25823297
Alignment:
Q  632 ggcttaggcttagcatgagtagcaataaggagaaacaaagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaagaac 719  Q
    ||||| |||||| |||||||||||||||||||||||||||||       ||||||| | | |||||||||||||||||||||||||||    
T  25823377 ggcttgggcttaacatgagtagcaataaggagaaacaaagtc-------acaattaaggaatgtgcaccaccttcacaagacaagaac 25823297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 1509816 - 1509928
Alignment:
Q  124 cttagtgaatatggaaatatgtcaagtg----tgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggactgaagataacaggagaag 219  Q
    |||||||||||||| |||||||||||||    ||| ||||| |||||||| || ||||||||||||||| ||||||| ||| | ||||  |  || ||||    
T  1509816 cttagtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagctcaagagggaattaagaccattggtgaag 1509915  T
Q  220 gacttgaatgggg 232  Q
    |||||||||||||    
T  1509916 gacttgaatgggg 1509928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 433
Target Start/End: Complemental strand, 36778894 - 36778856
Alignment:
Q  395 tacaacggtcctgagagagttcacactcatcactttgag 433  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  36778894 tacaacggtcctgagagaattcacactcatcactttgag 36778856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 1509706 - 1509807
Alignment:
Q  4 aacatttctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaaga 103  Q
    ||||| ||||||||||||||||| |||||||| || ||||| | |||  | |||||| | || ||||| |||||||| |||||||| || |||| |||||    
T  1509706 aacatctctgattacaactcaatattttggattgctcacccagatggagccgcaattattgaccaagttgagcaaaaattagccttaaaacctg-aaaga 1509804  T
Q  104 tga 106  Q
    |||    
T  1509805 tga 1509807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 44129160 - 44129541
Alignment:
Q  7 atttctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatga 106  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||| || |||||||||||||    
T  44129160 atttctgattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttgagcaaaagttagccttaaaacctgaaaagatga 44129259  T
Q  107 gagccactagagaagtgcttagtgaatatggaaatatgtcaagtg----tgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggact 202  Q
     |||||| |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  44129260 aagccaccagagaagtgcttagtgaatatggaaatatgtcaagtgcttgtgttttgtttatcttagatgaaatgagaaagaagtcagctcaagatggact 44129359  T
Q  203 gaagataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttgtgcagtgtcgctatatgaaat 302  Q
    |||||  || |||||||||||||| |||||||| |||||||||||||||||||| ||||| || | ||||||||||||| |||||||||||||||||  |    
T  44129360 gaagaccacgggagaaggacttgagtggggtgttttatttggctttggaccaggtcttactattgaaactgttgttttgcgcagtgtcgctatatgaggt 44129459  T
Q  303 gcttaattattttatttttatttatcacttccaaatttgcttgatttttatgtaaggatgaaaaactcgtctacagttcaacat 386  Q
    |||||||||||||||||| ||  ||||||| |||||||||||||||||| |||||||||||| |||  ||||||| ||||||||    
T  44129460 gcttaattattttattttcatgaatcactttcaaatttgcttgattttt-tgtaaggatgaataacctgtctaca-ttcaacat 44129541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 44133365 - 44133747
Alignment:
Q  7 atttctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatga 106  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||| || |||||||||||||    
T  44133365 atttctgattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttgagcaaaagttagccttaaaacctgaaaagatga 44133464  T
Q  107 gagccactagagaagtgcttagtgaatatggaaatatgtcaagtg----tgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggact 202  Q
     |||||| |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||| ||| ||||||||||| |    
T  44133465 aagccaccagagaagtgcttagtgaatatggaaatatgtcaagtgcctgtgttttgtttatcttagatgaaatgagaaagaagtcagctcaagatggatt 44133564  T
Q  203 gaagataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttgtgcagtgtcgctatatgaaat 302  Q
    |||||  |||||||||||||||||||  ||||| ||||||||||||||||| || |||||||| | ||||||||||||| | ||| |||||||||||  |    
T  44133565 gaagaccacaggagaaggacttgaatttggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtatcgctatatgaggt 44133664  T
Q  303 gcttaattattttatttttatttatcacttccaaatttgcttgatttttatgtaaggatgaaaaactcgtctacagttcaacat 386  Q
    ||||| |||||||||||| || |||||| | ||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  44133665 gcttatttattttattttcatgtatcaccttcaaatttgcttgatttttatgtaaggatgaataacctgtctaca-ttcaacat 44133747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 44141787 - 44142170
Alignment:
Q  7 atttctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatga 106  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||| || |||||||||||||    
T  44141787 atttctgattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttgagcaaaagttagccttaaaacctgaaaagatga 44141886  T
Q  107 gagccactagagaagtgcttagtgaatatggaaatatgtcaagtg----tgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggact 202  Q
     |||||| |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||| ||| ||||||||||| |    
T  44141887 aagccaccagagaagtgcttagtgaatatggaaatatgtcaagtgcctgtgttttgtttatcttagatgaaatgagaaagaagtcagctcaagatggatt 44141986  T
Q  203 gaagataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttgtgcagtgtcgctatatgaaat 302  Q
    |||||  || |||||||||||||| |  ||||| ||||||||||||||||| || |||||||| | ||||||||||||  |||||||||||||||||  |    
T  44141987 gaagaccacgggagaaggacttgagtttggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttacgcagtgtcgctatatgaggt 44142086  T
Q  303 gcttaattattttatttttatttatcacttccaaatttgcttgatttttatgtaaggatgaaaaactcgtctacagttcaacat 386  Q
    |||||||||||||||| |  | |||||||| ||||||| |||||||||||||||||| ||||||||| ||||| ||||||||||    
T  44142087 gcttaattattttattatcttgtatcactttcaaattttcttgatttttatgtaaggttgaaaaacttgtctagagttcaacat 44142170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 553 - 720
Target Start/End: Complemental strand, 21040687 - 21040527
Alignment:
Q  553 tgtatttgtcaaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagta 652  Q
    ||||||| | ||||||||||| | || ||||||||||||| |||||  | | ||| || ||||||||||||| ||    |||||||||||| ||||||||    
T  21040687 tgtattttttaaagtgacaataagggttatttttacaacgatcctggtaaaattcgcactcatcactttgagtttactaggcttaggcttaacatgagta 21040588  T
Q  653 gcaataaggagaaacaaagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    |||||||||||||||||||||       ||||||| | ||||||||||||||||| ||||||||||||    
T  21040587 gcaataaggagaaacaaagtc-------acaattaaggagtgtgcaccaccttcataagacaagaaca 21040527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 575 - 720
Target Start/End: Original strand, 30634699 - 30634837
Alignment:
Q  575 atggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagtagcaataaggagaaacaaagtca 674  Q
    |||| ||||||||||| |||| ||| ||| |||||| |||| |||||||| ||  | |||||| ||||||||||||||||| |||||||||||||||       
T  30634699 atggttatttttacaatggtcatgagagaattcacactcattactttgagtttaccaggcttaagcttagcatgagtagcattaaggagaaacaaag--- 30634795  T
Q  675 caactcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
        | ||||||| | ||||||||||||||||||||||||||||||    
T  30634796 ----ttacaattaaggagtgtgcaccaccttcacaagacaagaaca 30634837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 666
Target Start/End: Original strand, 13697952 - 13698065
Alignment:
Q  553 tgtatttgtcaaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagta 652  Q
    ||||||| | ||||||| ||| |||| ||||||||| || ||||||| ||| || ||| |||||||||| || ||  | |||| | ||||||||||  ||    
T  13697952 tgtattttttaaagtgataataatggttatttttacgacagtcctgagagaatttacactcatcacttttagtttaccaggctcaagcttagcatggata 13698051  T
Q  653 gcaataaggagaaa 666  Q
    ||||||||||||||    
T  13698052 gcaataaggagaaa 13698065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 720
Target Start/End: Original strand, 10510106 - 10510147
Alignment:
Q  679 tcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    ||||||||| | |||||||||||| |||||||||||||||||    
T  10510106 tcacaattaaggagtgtgcaccacattcacaagacaagaaca 10510147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 24163323 - 24163023
Alignment:
Q  10 tctgattacaactcaatcttttggatcgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatgagag 109  Q
    |||||||||||||||||||||||||| || ||| ||||||| || |||||| ||||  || | ||| |||||||||||||||| |||||||||||||| |    
T  24163323 tctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaattgaggaaaagttagccttgaaacctgaaaagatgagtg 24163224  T
Q  110 ccactagagaagtgcttagtgaatatggaaatatgtcaag----tgtgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggactgaa 205  Q
    |||||||| || |||||||||||||||| || ||||||||    ||||| || || ||||||||||| |||||||| |||||  ||||||||||||| ||    
T  24163223 ccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttagatgagatgagaaacaaatcggctcaagatggactaaa 24163124  T
Q  206 gataacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccataggaactgttgttttgtgcagtgtcgctatatgaaatgct 305  Q
    ||  ||||||||||| ||||||||||||||||| ||  ||||||| |||||||||||||| | |||  ||||| |   |||||| ||||||||| |||||    
T  24163123 gaccacaggagaagggcttgaatggggtgtgttgttaagctttgggccaggacttaccattgaaacgattgttctccacagtgtggctatatgatatgct 24163024  T
Q  306 t 306  Q
    |    
T  24163023 t 24163023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 553 - 720
Target Start/End: Complemental strand, 44747709 - 44747549
Alignment:
Q  553 tgtatttgtcaaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagta 652  Q
    ||||||| | ||||||||||| |||  ||||||||| |||||||||| ||| |||||| ||||||||||||  ||  | |||||||||||||||||||||    
T  44747709 tgtattttttaaagtgacaataatgattatttttacgacggtcctgagagaattcacactcatcactttgaatttaccaggcttaggcttagcatgagta 44747610  T
Q  653 gcaataaggagaaacaaagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    ||||||||||||||||| |       | ||||||| | |||||||||||||||||||| |||||||||    
T  44747609 gcaataaggagaaacaatg-------taacaattaaggagtgtgcaccaccttcacaaaacaagaaca 44747549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 432
Target Start/End: Complemental strand, 44747672 - 44747639
Alignment:
Q  399 acggtcctgagagagttcacactcatcactttga 432  Q
    |||||||||||||| |||||||||||||||||||    
T  44747672 acggtcctgagagaattcacactcatcactttga 44747639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 563 - 720
Target Start/End: Original strand, 26762696 - 26762845
Alignment:
Q  563 aaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagtagcaataagga 662  Q
    ||||||||||| |||  |||||||||||| ||||||| ||| |||||| |||||| |||||| ||||| ||||||||||||||||||||| |||||||||    
T  26762696 aaagtgacaataatgattatttttacaacagtcctgagaga-ttcacactcatcattttgagtttgtcaggcttaggcttagcatgagtaacaataagga 26762794  T
Q  663 gaaacaaagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    |||||||||       ||||||||| | ||||||||||||||||||||||||||||||    
T  26762795 gaaacaaag-------tcacaattaaggagtgtgcaccaccttcacaagacaagaaca 26762845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 553 - 670
Target Start/End: Complemental strand, 10663502 - 10663384
Alignment:
Q  553 tgtatttgtcaaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagt- 651  Q
    ||||||| | ||||||||||| |||| |||||||||||||||||||| ||| ||| || ||||||||||||| || || |||||| |||||||||||||     
T  10663502 tgtattttttaaagtgacaataatggttatttttacaacggtcctgagagaattctcactcatcactttgagtttatcaggcttaagcttagcatgagta 10663403  T
Q  652 agcaataaggagaaacaaa 670  Q
    |||||||| ||||||||||    
T  10663402 agcaataaagagaaacaaa 10663384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 553 - 670
Target Start/End: Complemental strand, 10877647 - 10877529
Alignment:
Q  553 tgtatttgtcaaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagt- 651  Q
    ||||||| | ||||||||||| |||| |||||||||||||||||||| ||| ||| || ||||||||||||| || || |||||| |||||||||||||     
T  10877647 tgtattttttaaagtgacaataatggttatttttacaacggtcctgagagaattctcactcatcactttgagtttatcaggcttaagcttagcatgagta 10877548  T
Q  652 agcaataaggagaaacaaa 670  Q
    |||||||| ||||||||||    
T  10877547 agcaataaagagaaacaaa 10877529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 395 - 433
Target Start/End: Complemental strand, 10663469 - 10663431
Alignment:
Q  395 tacaacggtcctgagagagttcacactcatcactttgag 433  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  10663469 tacaacggtcctgagagaattctcactcatcactttgag 10663431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 395 - 433
Target Start/End: Complemental strand, 10877614 - 10877576
Alignment:
Q  395 tacaacggtcctgagagagttcacactcatcactttgag 433  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  10877614 tacaacggtcctgagagaattctcactcatcactttgag 10877576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0945 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0945
Description:

Target: scaffold0945; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 553 - 720
Target Start/End: Original strand, 1546 - 1706
Alignment:
Q  553 tgtatttgtcaaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagta 652  Q
    ||||||| | ||||||||||| || | |||||||||||||||||||| ||| || ||| ||||||||||||| ||  | ||||||| |||||||||||||    
T  1546 tgtattttttaaagtgacaataattgttatttttacaacggtcctgagagaatttacactcatcactttgagtttaccaggcttagacttagcatgagta 1645  T
Q  653 gcaataaggagaaacaaagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    |||||||||||||||||||       ||||||||| | |||||||||||| |||||||||||||||||    
T  1646 gcaataaggagaaacaaag-------tcacaattaaggagtgtgcaccactttcacaagacaagaaca 1706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0945; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 1579 - 1617
Alignment:
Q  395 tacaacggtcctgagagagttcacactcatcactttgag 433  Q
    |||||||||||||||||| || |||||||||||||||||    
T  1579 tacaacggtcctgagagaatttacactcatcactttgag 1617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 567 - 720
Target Start/End: Original strand, 11179116 - 11179262
Alignment:
Q  567 tgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagtagcaataaggagaaa 666  Q
    ||||||| |||| |||||||||||||||||||| ||| |||||| ||||||||||||| ||  | |||||| ||||||||||||||||||||||||||||    
T  11179116 tgacaataatggttatttttacaacggtcctgagagaattcacactcatcactttgagtttaccaggcttaagcttagcatgagtagcaataaggagaaa 11179215  T
Q  667 caaagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    |||||       ||||||||| | ||| || |||||||||||||||||||||||    
T  11179216 caaag-------tcacaattaaggagtctgtaccaccttcacaagacaagaaca 11179262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 563 - 720
Target Start/End: Complemental strand, 35772248 - 35772098
Alignment:
Q  563 aaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagtagcaataagga 662  Q
    ||||||||||| | || ||||||||||||  |||||| ||| |||||| ||||||||||||| ||  | |||||||||||| ||||||||||||||||||    
T  35772248 aaagtgacaataacggttatttttacaactatcctgagagaattcacactcatcactttgagtttaccgggcttaggcttaacatgagtagcaataagga 35772149  T
Q  663 gaaacaaagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    |||||||||||       ||||||| | ||||||||||||||||||||||||||||||    
T  35772148 gaaacaaagtc-------acaattaaggagtgtgcaccaccttcacaagacaagaaca 35772098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 553 - 716
Target Start/End: Complemental strand, 36739844 - 36739688
Alignment:
Q  553 tgtatttgtcaaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagta 652  Q
    ||||||| | ||||||||| | |||  |||||||||||||||||||| ||| |||||| ||||||||||||| ||  | | |||||||||||||||||||    
T  36739844 tgtattttttaaagtgacagtaatgattatttttacaacggtcctgagagaattcacactcatcactttgagtttaccagacttaggcttagcatgagta 36739745  T
Q  653 gcaataaggagaaacaaagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaag 716  Q
    |||||||||||||||||||        |||||||| | ||||||||||||||||||||||||||    
T  36739744 gcaataaggagaaacaaag-------acacaattaaggagtgtgcaccaccttcacaagacaag 36739688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 569 - 718
Target Start/End: Original strand, 27071970 - 27072111
Alignment:
Q  569 acaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagtagcaataaggagaaaca 668  Q
    ||||| |||| |||||||||||||||||||| ||| |||||| |||||||| |||| ||    |||||||| ||||||||||| ||||||||||||||||    
T  27071970 acaataatggttatttttacaacggtcctgagagaattcacactcatcactatgagtttacaaggcttagg-ttagcatgagttgcaataaggagaaaca 27072068  T
Q  669 aagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaagaa 718  Q
    |||       ||||||||| | | ||||||||||||||||||||||||||    
T  27072069 aag-------tcacaattaaggactgtgcaccaccttcacaagacaagaa 27072111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 11179135 - 11179173
Alignment:
Q  395 tacaacggtcctgagagagttcacactcatcactttgag 433  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  11179135 tacaacggtcctgagagaattcacactcatcactttgag 11179173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 433
Target Start/End: Complemental strand, 36739811 - 36739773
Alignment:
Q  395 tacaacggtcctgagagagttcacactcatcactttgag 433  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  36739811 tacaacggtcctgagagaattcacactcatcactttgag 36739773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 27071987 - 27072025
Alignment:
Q  395 tacaacggtcctgagagagttcacactcatcactttgag 433  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  27071987 tacaacggtcctgagagaattcacactcatcactatgag 27072025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 9e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 553 - 720
Target Start/End: Complemental strand, 987678 - 987518
Alignment:
Q  553 tgtatttgtcaaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagta 652  Q
    ||||||| | ||||||||| | |||| |||||||| ||||||||||| ||| |||||| ||||||||||||| ||    |||||||||||||||||||||    
T  987678 tgtattttttaaagtgacactaatggttatttttataacggtcctgagagaattcacactcatcactttgagtttactaggcttaggcttagcatgagta 987579  T
Q  653 gcaataaggagaaacaaagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    || ||||| ||||||||||||       ||||||| | |||||||||||||||||||| |||||||||    
T  987578 gcgataagaagaaacaaagtc-------acaattaaggagtgtgcaccaccttcacaatacaagaaca 987518  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 37858897 - 37858847
Alignment:
Q  10 tctgattacaactcaatcttttggatcgcacaccctggtggccctgcaatt 60  Q
    ||||||||||| || |||||||||||||||||||||||||| || ||||||    
T  37858897 tctgattacaattccatcttttggatcgcacaccctggtggaccagcaatt 37858847  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 433
Target Start/End: Complemental strand, 987642 - 987607
Alignment:
Q  398 aacggtcctgagagagttcacactcatcactttgag 433  Q
    ||||||||||||||| ||||||||||||||||||||    
T  987642 aacggtcctgagagaattcacactcatcactttgag 987607  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 720
Target Start/End: Original strand, 42802623 - 42802664
Alignment:
Q  679 tcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    ||||||||| | ||||||||||||||||| ||||||||||||    
T  42802623 tcacaattaaggagtgtgcaccaccttcaaaagacaagaaca 42802664  T

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Target: scaffold0083 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 553 - 720
Target Start/End: Complemental strand, 3986 - 3828
Alignment:
Q  553 tgtatttgtcaaagtgacaatgatggctatttttacaacggtcctgaaagagttcacaatcatcactttgaggttgtctggcttaggcttagcatgagta 652  Q
    ||||||| | ||||||| ||| |||| |||||| ||||||||||||| ||| |||||| ||||||||||||| ||    ||||||| |||||||||||||    
T  3986 tgtattttttaaagtgataataatggttatttt-acaacggtcctgagagaattcacactcatcactttgagtttactaggcttag-cttagcatgagta 3889  T
Q  653 gcaataaggagaaacaaagtcacaactcacaattaggaagtgtgcaccaccttcacaagacaagaaca 720  Q
    |||||||||||||||||||       ||| |||||   ||||||||||||||||||||||||||||||    
T  3888 gcaataaggagaaacaaag-------tcagaattaaagagtgtgcaccaccttcacaagacaagaaca 3828  T

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Target: scaffold0083; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 433
Target Start/End: Complemental strand, 3954 - 3916
Alignment:
Q  395 tacaacggtcctgagagagttcacactcatcactttgag 433  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  3954 tacaacggtcctgagagaattcacactcatcactttgag 3916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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