View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-27 (Length: 732)
Name: NF0075-INSERTION-27
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-27 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 555; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 8 - 732
Target Start/End: Original strand, 41928317 - 41929059
Alignment:
| Q |
8 |
catagttggagtctttttgcattaccatgcatataaaccnnnnnnnggtatatataccttttaaaaacacttatttccgcttaagtgtttaattttctct |
107 |
Q |
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| T |
41928317 |
catagttggagtctttttgcattaccatgcatataaacctttttttggtatatataccttttaaaaacacctatttctgactaagtgtttaattttctct |
41928416 |
T |
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| Q |
108 |
cactctcattgattatacacatactatactcaaactgtttaatgaagttcatgaaaagaaacatattagtaaaacaaagagtgctattatttatagctag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41928417 |
cactctcattgattatacacatactatactcaaactgtttaatgaagttcatgaaaagaaacatattagtaaaacaaatagtgctattatttatagctag |
41928516 |
T |
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| Q |
208 |
caagcatttatgtctggattttgnnnnnnnttata--actgctgcttcacgccaattatatataa------ctaatattgtggtgatgttagaggatgga |
299 |
Q |
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| T |
41928517 |
caagcatttatgtttggattttgaaaaaaattatataactgctgcttcacgccaattatatataataataactactattgtggtgatgttagaggatgga |
41928616 |
T |
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| Q |
300 |
gtgcaaccagctgattcgagggtgcaagaagaattttcaagagcctttcccattgcaaatgtgcatagattgatgaaaaaagctctaccaagacatgcaa |
399 |
Q |
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| T |
41928617 |
gtgcaaccagctagttcgagggtgcaagaagaattttcaagagcctttcccattgcgaatgtgcatagattgatgaaaaaagctctaccaagacatgcaa |
41928716 |
T |
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| Q |
400 |
agataaccgatgaaagcaaggaaattatggtgaaatatgcagctgaattcattagctttgttaccgctgaggctaaccattattgcaagttagattgtag |
499 |
Q |
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| T |
41928717 |
agataaccgatgaaagcaaggaaattatggtgaaatatgcagctgaatttattagctttgttaccgctgaggctaaccattattgcaagttagattgtag |
41928816 |
T |
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| Q |
500 |
aacaacaattactgctgaagatttgttagctactatgcaaaaattgggctttgatgactatgctcagtattccttccgctacatccaactttttcgtcat |
599 |
Q |
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| T |
41928817 |
aacaacaattactgctgaagatttgttagctactatgcaaaaattgggctttgatgactatgctcaatattccttccgctacatccaactttttcgtcat |
41928916 |
T |
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| Q |
600 |
ggtgctcgtgtaggtcaatatgctcccccacctccacctcca---------ccacaggattttcaagctcataatttttcattggatccgaatttcatgt |
690 |
Q |
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| T |
41928917 |
ggtgctcgtgtaggtcaatatgctcccccacctccacctccaccaccgccgccacaggattttcaagctcataattttccattggatccaaattccgtgc |
41929016 |
T |
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| Q |
691 |
ttgccgacccaacagaaatgggtgcaatttta-gagatgatga |
732 |
Q |
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| T |
41929017 |
ttaccgacccaacagaaatgggtgcaattttaggagatgatga |
41929059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 490 - 723
Target Start/End: Original strand, 41938037 - 41938279
Alignment:
| Q |
490 |
tagattgtagaacaacaattactgctgaagatttgttagctactatgcaaaaattgggctttgatgactatgctcagtattccttccgctacatccaact |
589 |
Q |
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| T |
41938037 |
tagattgtagaacaacaattactgctgaagatttgttagctactatgcaaaaattgggctttgatgactatgctcggtattccttccgctacatccaact |
41938136 |
T |
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| Q |
590 |
ttttcgtcatggtgctcgtgtaggtcaatatgctcccccacctccacctcca---------ccacaggattttcaagctcataatttttcattggatccg |
680 |
Q |
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| T |
41938137 |
ttttcgtcatggtgctcgtgtaggtcaatatgctcccccacctccacctccaccaccgccgccacaggattttcaagctcataattttccattggatccg |
41938236 |
T |
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| Q |
681 |
aatttcatgtttgccgacccaacagaaatgggtgcaattttag |
723 |
Q |
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| T |
41938237 |
aatttcatgtttgccgacccaacagaaatgggtgcaattttag |
41938279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 398 - 732
Target Start/End: Original strand, 41910977 - 41911313
Alignment:
| Q |
398 |
aaagataaccgatgaaagcaaggaaattatggtgaaatatgcagctgaattcattagctttgttaccgctgaggctaa--ccattattgcaagttagatt |
495 |
Q |
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| T |
41910977 |
aaagataaccgatgaaagcaaggaaattatggtgaac----cagctgaattcattagctttgttactgctgagaccaaaaccattattgcaatttagatt |
41911072 |
T |
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| Q |
496 |
gtagaacaacaattactgctgaagatttgttagctactatgcaaaaattgggctttgatgactatgctcagtattccttccgctacatccaactttttcg |
595 |
Q |
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| T |
41911073 |
ataggacaacaattactgctgaagatttgttaattagtatgcaaaaattgggttttgatgtctatgctgcgtgttccctccgctacatccaacttttttg |
41911172 |
T |
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| Q |
596 |
tcatggtgctcgtgtaggtcaatatgctcccccacctccacc---tccaccacaggattttcaagctcataatttttcattggatccgaatttcatgttt |
692 |
Q |
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| T |
41911173 |
ccatcgtgctcgcgtaagtcaatacgctcccccacctccaccactgccgccacaggattttcaggctcataattttccattggatccaaatttcgtgctt |
41911272 |
T |
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| Q |
693 |
gccgacccaacagaaatgggtgcaattttaga-gatgatga |
732 |
Q |
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| T |
41911273 |
gccgacccaacagaaatgggtgcaattttagatgatgatga |
41911313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 241 - 414
Target Start/End: Original strand, 41910619 - 41910792
Alignment:
| Q |
241 |
taactgctgcttcacgccaattatatataactaatattgtggtgatgttagaggatggagtgcaaccagctgattcgagggtgcaagaagaattttcaag |
340 |
Q |
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| T |
41910619 |
taactactacttcacgccaattataaataactactattgtggtgatgttagaggatggagtgcaaccagctagttcgagggtgcatgaagaattttcaag |
41910718 |
T |
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| Q |
341 |
agcctttcccattgcaaatgtgcatagattgatgaaaaaagctctaccaagacatgcaaagataaccgatgaaa |
414 |
Q |
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| T |
41910719 |
agcctttcccattgccaatgtgcatagattgatgaaaaaagctcttcctcaacatgcaaagataaccgatgaaa |
41910792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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