View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-31 (Length: 610)
Name: NF0075-INSERTION-31
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-31 |
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Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 602
Target Start/End: Complemental strand, 23129246 - 23128652
Alignment:
| Q |
8 |
gtgagaacacttttccacggcgaaagaattctctgcgacgaagtattcgccgccgcagggaagagaatagctgagtcttgtttcgcagagattaccaaag |
107 |
Q |
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| T |
23129246 |
gtgagaacacttttccacggcgaaagaattctatgcgacgacgtattcgccgccgcagggaagagaatagctgagtcttgtttcgcagagattaccaaag |
23129147 |
T |
|
| Q |
108 |
aaggtgctacatctctttttacttttccggacatggtagcaaaatgcaagaaaactcctgagaaaatgttcagaactcttgatttatatgaagcaatttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23129146 |
aaggtgctacatctctttttacttttccggacatggtagcaaaatgcaagaaaactcctgagaaaatgttcagaactcttgatttatacgaagcaatttc |
23129047 |
T |
|
| Q |
208 |
agatcattttcaacaaattcaatcgattttctcgtttgaatcaacttccaacgtccgtttacaagccgttaattcaatggagaaactcgcagaagctgtt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
23129046 |
agatcattttcaacaaattcaatcgattttctcgtttgaatcaacttccaacgtccgtttacaagccattaattcaatggagaaacttgcagaagctgtt |
23128947 |
T |
|
| Q |
308 |
aaaacgatgttaaaggaattcgaatcagctattcagaaagattcttcaaagaagcaagtctccggtggtggtgttcatcctctcacacgctatgtcatga |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23128946 |
aaaacgatgttaaaggaattcgaatcagctattcagaaagattcttcaaagaaacaagtctccggtggtggtgttcatcctctcacacgctatgtcatga |
23128847 |
T |
|
| Q |
408 |
attacctaaccttcctcgccgattacggtggaattctcgctgatatcgtcttcgatatgccgcagtctccgttaccggagtcgtactatcgaagtcctat |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23128846 |
attacctaaccttcctcgccgattacggtggaattctcgctgatatcgtcttcgatatgccgcagtctccgttaccggagtcgtactatcgaagtccgat |
23128747 |
T |
|
| Q |
508 |
gcgcagcgagaattcatcgtcatcctcgtcatcatcatcttcgtcggagatatcagaaaaaatcgcgtggctgatacttgttcgtctctgcaaac |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23128746 |
gcgcagcgagaattcatcgtcatcctcgtcatcatcatcttcatcggagatatcagaaaaaatcgcgtggctgatacttgttcttctctgcaaac |
23128652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 41103291 - 41103227
Alignment:
| Q |
146 |
gcaaaatgcaagaaaactcctgagaaaatgttcagaactcttgatttatatgaagcaatttcaga |
210 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
41103291 |
gcaaaatgcaagaaaactccggagaaaatgttcagaacgcttgatttatacgaagcgatttcaga |
41103227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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