View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0075-INSERTION-32 (Length: 724)

Name: NF0075-INSERTION-32
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0075-INSERTION-32
NF0075-INSERTION-32
[»] chr4 (4 HSPs)
chr4 (7-724)||(30426793-30427518)
chr4 (160-226)||(32737354-32737422)
chr4 (225-292)||(31908728-31908795)
chr4 (225-323)||(51944714-51944812)
[»] chr8 (6 HSPs)
chr8 (225-331)||(32238222-32238327)
chr8 (225-292)||(36886215-36886282)
chr8 (224-297)||(19718367-19718440)
chr8 (229-292)||(17642363-17642426)
chr8 (229-324)||(36274585-36274680)
chr8 (231-323)||(1221444-1221537)
[»] chr2 (2 HSPs)
chr2 (160-226)||(21995836-21995903)
chr2 (253-331)||(17821836-17821914)
[»] chr5 (5 HSPs)
chr5 (229-321)||(35817373-35817465)
chr5 (229-292)||(13091203-13091266)
chr5 (229-343)||(17465251-17465365)
chr5 (245-322)||(9589514-9589591)
chr5 (245-322)||(14967537-14967614)
[»] chr3 (1 HSPs)
chr3 (225-305)||(46868527-46868607)
[»] chr1 (5 HSPs)
chr1 (163-226)||(2665391-2665456)
chr1 (232-296)||(29852238-29852302)
chr1 (229-340)||(34100718-34100829)
chr1 (229-286)||(20280511-20280568)
chr1 (171-224)||(51229782-51229835)
[»] chr6 (3 HSPs)
chr6 (225-300)||(24215301-24215376)
chr6 (229-323)||(31644432-31644526)
chr6 (251-332)||(20469049-20469130)


Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 7 - 724
Target Start/End: Original strand, 30426793 - 30427518
Alignment:
Q  7 acatttgaaaattcgagtgtgtaagtatatcaaatttttaaattaataggtaaatgaaaaggaaaatattttctatcataactagtttaccaacttgatc 106  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30426793 acatttgaaaattcgagtgtgcaagtatatcaaatttttaaattaataggtaaatgaaaaggaaaatattttctatcataactagtttaccaacttgatc 30426892  T
Q  107 aannnnnnnn-ctatttatcaaaagtgtcggcgaaataaaatttannnnnnnn-gaatttttattcttcataataaagaatattgatcatttttacgata 204  Q
    ||         |||||||||||||||||| |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  30426893 aatttttttttctatttatcaaaagtgtcagcgaaataaaatttatttttttttgaatttttattcttcataataaagaatattgatcatttttacgata 30426992  T
Q  205 aatgtaaaaatttagtatgatttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30426993 aatgtaaaaatttagtatgatttttaaaatataaaattcgacaaacaactttttatttcaaaaatatgattgttaatttatatattttgaaagcaaatgt 30427092  T
Q  305 accaatacacctcaatttataagtgtattatagaagctcctttgttatgatcacnnnnnnntttcaagtatgagcgtatgaaactaatcaaaatgnnnnn 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||         
T  30427093 accaatacacctcaatttataagtgtattatagaagctcctttgttatgatcacaaaaaaaattcaagtatgagcgtatgaaactaatcaaaatgaaaaa 30427192  T
Q  405 nn-tgtttgtttttcaaattatgtgaaaacccctatttcgtttggtcttttatttctatc----cagtctataatacttgaaattaataggtggtttttt 499  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||||||||||||||||||||||||||||||||    
T  30427193 aaatgtttgtttttcaaattatgtgaaaacccctatttcgtttggtcttttatttctatcagaccggtctataatacttgaaattaataggtggtttttt 30427292  T
Q  500 cttattgtcgaattacgaaaacaactcatgttagaggttatgtttatgagattctctacttattcatcttagagtagaggtaaaattttagtcattatgt 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30427293 cttattgtcgaattacgaaaacaactcatgttagaggttatgtttatgagattctctacttattcaccttagagtagaggtaaaattttagtcattatgt 30427392  T
Q  600 tacttaataaaaagaaagatggtaatggtttcttgtgtattctatgatagttgtttgagcccattctcaagttcttttgactgggttacactctaacgag 699  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30427393 tacttaataaaaagaaagatggtaatgttttcttgtgtatcctatgatagtcgttcgagcccattctcaagttcttttgactgggttacactctaacgag 30427492  T
Q  700 tac-aaagatggtgtttgtttttcca 724  Q
    ||| ||||||||||||||||||||||    
T  30427493 tacaaaagatggtgtttgtttttcca 30427518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 32737422 - 32737354
Alignment:
Q  160 aatttttattcttcataataaagaatattgatca-tttttacgataaa-tgtaaaaatttagtatgatt 226  Q
    ||||||||||  |||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  32737422 aatttttattactcataatagagaatattgattagtttttacgataaaatgtaaaaatttagtatgatt 32737354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 31908728 - 31908795
Alignment:
Q  225 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagatttt 292  Q
    |||||||||||||||  || ||||| |||||||||||||| |||  |||| ||||||||||| |||||    
T  31908728 tttttaaaatataaatatcaacaaatagctttttatttcataaaattgatagttaatttataaatttt 31908795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 51944714 - 51944812
Alignment:
Q  225 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaattta 323  Q
    |||||||||||||||   ||| ||| | || ||||||||| |||  ||||  |||||||||| ||||   ||||||| |||||||||||||||||||||    
T  51944714 tttttaaaatataaatgccgataaataactatttatttcataaaattgatcattaatttataaatttatgaagcaaaagtaccaatacacctcaattta 51944812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 225 - 331
Target Start/End: Original strand, 32238222 - 32238327
Alignment:
Q  225 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatttat 324  Q
    |||||||||||||||| |||||||| | ||||| |||||| ||| ||||| ||||||||||| |||| |||| |||  ||||||||||||||||||||||    
T  32238222 tttttaaaatataaaagtcgacaaataactttt-atttcataaaaatgatcgttaatttataaatttagaaaacaagagtaccaatacacctcaatttat 32238320  T
Q  325 aagtgta 331  Q
     ||||||    
T  32238321 gagtgta 32238327  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 36886282 - 36886215
Alignment:
Q  225 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagatttt 292  Q
    |||||||||||||||  || ||||| |||| ||||||||||||| ||||| ||||||||||| |||||    
T  36886282 tttttaaaatataaatatcaacaaatagctctttatttcaaaaaaatgatagttaatttatatatttt 36886215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 19718440 - 19718367
Alignment:
Q  224 atttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaag 297  Q
    ||||||||||||||||  || ||||| |||| ||||||||| ||| || || ||||||||||||||||| ||||    
T  19718440 atttttaaaatataaatatcaacaaatagctctttatttcataaaaataatagttaatttatagatttttaaag 19718367  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 17642363 - 17642426
Alignment:
Q  229 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagatttt 292  Q
    |||||||||||  || ||||| |||||||||||||| ||| ||||| ||||||||||| |||||    
T  17642363 taaaatataaatatcaacaaatagctttttatttcataaaaatgatagttaatttataaatttt 17642426  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 324
Target Start/End: Complemental strand, 36274680 - 36274585
Alignment:
Q  229 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatttat 324  Q
    |||||||||||  ||||| || | || ||||||||| |||  |||| ||||||||||| |||| | ||||||  |||||| |||||||||||||||    
T  36274680 taaaatataaatgtcgacgaataactatttatttcataaaattgatcgttaatttatatatttaggaagcaagagtaccagtacacctcaatttat 36274585  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 1221537 - 1221444
Alignment:
Q  231 aaatataaaattcgacaaacagctttttatttcaaaaatat-gattgttaatttatagattttgaaagcaaatgtaccaatacacctcaattta 323  Q
    |||||||||| | || ||| | |||||||||||| ||| || ||| |||||||||||| ||| |||| |||  | |||||||||||||||||||    
T  1221537 aaatataaaagttgaaaaatatctttttatttcataaaaattgatcgttaatttatagctttagaaaacaatagaaccaatacacctcaattta 1221444  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 21995903 - 21995836
Alignment:
Q  160 aatttttattcttcataataaagaatattgatcatttttacgat-aaatgtaaaaatttagtatgatt 226  Q
    ||||||||||  |||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  21995903 aatttttattactcataatagagaatatcgattatttttacgatgaaatgtaaaaatttagtatgatt 21995836  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 17821836 - 17821914
Alignment:
Q  253 ctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatttataagtgta 331  Q
    |||||||||||| |||  |||||||||||  ||| |||| | ||||||  |||||||||||||| ||||||| ||||||    
T  17821836 ctttttatttcataaaattgattgttaatgcataaatttaggaagcaagagtaccaatacaccttaatttatgagtgta 17821914  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 321
Target Start/End: Complemental strand, 35817465 - 35817373
Alignment:
Q  229 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatt 321  Q
    |||||||||||  || ||||| ||| |||||||||| ||| || || ||||||| ||||||||| |||||||| ||||| |||||||| ||||    
T  35817465 taaaatataaatatcaacaaatagcattttatttcataaaaattatagttaattgatagatttttaaagcaaaagtaccgatacaccttaatt 35817373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 13091203 - 13091266
Alignment:
Q  229 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagatttt 292  Q
    |||||||||||  || ||||| |||||||||||||| ||| ||||| ||||||||||| |||||    
T  13091203 taaaatataaatatcaacaaatagctttttatttcataaaaatgatagttaatttataaatttt 13091266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 343
Target Start/End: Complemental strand, 17465365 - 17465251
Alignment:
Q  229 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttga-aagcaaatgtaccaatacacctcaatttataag 327  Q
    ||||||||||||||||| ||| |||| |||||| ||  || ||||| ||||| ||||  ||||| | ||| || ||||||| |||||||||||||  |||    
T  17465365 taaaatataaaattcgataaatagctatttattccatgaaaatgatcgttaaattatt-attttaagaaggaagtgtaccactacacctcaatttgcaag 17465267  T
Q  328 tgtattatagaagctc 343  Q
    ||||| ||||||||||    
T  17465266 tgtatcatagaagctc 17465251  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 9589514 - 9589591
Alignment:
Q  245 acaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaattt 322  Q
    ||||| |||||||||||||| ||| ||||| ||||||||||| |||||  ||| ||  ||||| |||||||| |||||    
T  9589514 acaaatagctttttatttcataaaaatgatagttaatttataaatttttgaagtaagagtaccgatacaccttaattt 9589591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 14967537 - 14967614
Alignment:
Q  245 acaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaattt 322  Q
    ||||| |||||||||||||| ||| ||||| ||||||||||| |||||  ||| ||  ||||| |||||||| |||||    
T  14967537 acaaatagctttttatttcataaaaatgatagttaatttataaatttttgaagtaagagtaccgatacaccttaattt 14967614  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 46868607 - 46868527
Alignment:
Q  225 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgta 305  Q
    |||||| |||| ||||||||||||| |||| ||||||||| ||| || ||  ||||||||| ||||| |||||||||||||    
T  46868607 tttttacaatacaaaattcgacaaatagctctttatttcataaaaataatcattaatttattgatttagaaagcaaatgta 46868527  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 2665391 - 2665456
Alignment:
Q  163 ttttattcttcataataaagaatattgatca-tttttacgataaatgtaaaa-atttagtatgatt 226  Q
    |||||||  |||||||| ||||||||||| | |||||||||||||||||||| |||||||||||||    
T  2665391 ttttattactcataatagagaatattgattattttttacgataaatgtaaaatatttagtatgatt 2665456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 29852302 - 29852238
Alignment:
Q  232 aatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaa 296  Q
    ||||||||| |||||||| | || ||||||||| ||| |||||||||||||||| ||||| ||||    
T  29852302 aatataaaagtcgacaaataactatttatttcataaaaatgattgttaatttattgatttagaaa 29852238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 340
Target Start/End: Complemental strand, 34100829 - 34100718
Alignment:
Q  229 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatttataagt 328  Q
    |||||||||||  |||||||| | || ||||||||| |||  |||| |||| |||||||||||   ||||||  |||||  |||||||||||||| ||||    
T  34100829 taaaatataaatgtcgacaaataactatttatttcataaaattgatcgttagtttatagatttatgaagcaatagtaccggtacacctcaatttacaagt 34100730  T
Q  329 gtattatagaag 340  Q
    |||  |||||||    
T  34100729 gtaccatagaag 34100718  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 20280511 - 20280568
Alignment:
Q  229 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttata 286  Q
    |||||||||||  | |||||| | |||||||||||| ||| |||||||||||||||||    
T  20280511 taaaatataaatattgacaaataactttttatttcataaaaatgattgttaatttata 20280568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 51229835 - 51229782
Alignment:
Q  171 ttcataataaagaatattgatcatttttacgataaatgtaaaaatttagtatga 224  Q
    |||||||||| ||| ||||||  ||||||| ||||||||||||| |||||||||    
T  51229835 ttcataataatgaacattgatattttttacaataaatgtaaaaaattagtatga 51229782  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 24215301 - 24215376
Alignment:
Q  225 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaa 300  Q
    ||||||||||||||||  ||| ||| || | ||||||||| ||| |||||||||||||| |||||||  |||||||    
T  24215301 tttttaaaatataaaagacgataaatagttctttatttcataaaaatgattgttaatttttagatttaaaaagcaa 24215376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 31644526 - 31644432
Alignment:
Q  229 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaattta 323  Q
    |||||||||||   ||||||| | || ||||||||| |||  ||||||||| |||||||||||   ||||||  ||||| |||||||||||||||    
T  31644526 taaaatataaatgccgacaaataactatttatttcataaaattgattgttagtttatagatttatgaagcaagagtaccgatacacctcaattta 31644432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 20469130 - 20469049
Alignment:
Q  251 agctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatttataagtgtat 332  Q
    |||| ||||||||| ||| ||||| |||||||||||||||||  ||| ||  |||||  ||||||| |||||||| ||||||    
T  20469130 agctctttatttcataaaaatgatagttaatttatagatttttgaagtaagagtacccgtacaccttaatttataggtgtat 20469049  T

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