View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-33 (Length: 320)
Name: NF0075-INSERTION-33
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-33 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 31222458 - 31222145
Alignment:
| Q |
8 |
tagatctctttctaaaaccgcattacacacttcacatcactcttgcttgaatccgcataaaaaa-ctgcgcctttttcttcttctttccaacaaaacctt |
106 |
Q |
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| T |
31222458 |
tagatctctttctaaaaccgcattacacacttcacatcactcttgcttgaatccgcataaaaaaactgcgcctttttcttcttctttccaacaaaacctt |
31222359 |
T |
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| Q |
107 |
aatgggtattcatgatctctatctccgaaagccatgacatgaagattctcaactttggtaccatcgaaaatgtccttcacgtaggacaagacaagtctca |
206 |
Q |
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| T |
31222358 |
aatgggtattcatgatctctatctcccaaagccatgacatgaagattctcaactttggtaccatcgaaaatgtccttcacgtaggacaagacaagtctca |
31222259 |
T |
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| Q |
207 |
cgttgttgttcctgtcgacaatatcgataatgtttctcctcggaactctacggtagagaatgtgggagtgggagtgggagtgtatgagaaagagagagtg |
306 |
Q |
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| T |
31222258 |
cgttgttgttcctgtcgacaatatcgataatgtttctcctcggaactctacggtagagaatgtgggagtgggagtgggagtgtgtgagaaagagagagtg |
31222159 |
T |
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| Q |
307 |
tcttttgtgtctgt |
320 |
Q |
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|||| ||||||||| |
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| T |
31222158 |
tcttctgtgtctgt |
31222145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 31246814 - 31246737
Alignment:
| Q |
18 |
tctaaaaccgcattacacacttcacatcactc-ttgcttgaatccgcataaaaaactgcgcctttttcttcttctttc |
94 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||| ||||||| |
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| T |
31246814 |
tctaaaactgcattacacacttcacatcactctttgcttgaatctgcataaaaaactgcacatttttcttattctttc |
31246737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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