View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0075-INSERTION-35 (Length: 683)
Name: NF0075-INSERTION-35
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 5e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 168 - 507
Target Start/End: Complemental strand, 8526031 - 8525685
Alignment:
| Q |
168 |
cggtggttacttaatacaataaaagnnnnnnnccatctctttttcataaacctattgattttacagnnnnnnnnattaatgatatttatgtaattttata |
267 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
8526031 |
cggtggttacttaatacaataaaagaaaaaaaccatctctttttcataaacctattgattttacagtttttct-attaaggatatttgtgtaattttata |
8525933 |
T |
|
| Q |
268 |
catacacatattttataaattgggttttgtaattttctcagaaactaaaatttttcttcacttttaaaaaataaattatatgtcctt--gaaaaataaag |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8525932 |
catacacatattttataaattgggttttgtaattttctcagaaactaaaatttttcttcacttttaaaaaataaattatatgtccttaacaaaaataaag |
8525833 |
T |
|
| Q |
366 |
tgggaggaactgtgacatgaacaattcaaccaatcacctggcnnnnnnnnnnnnnnnnngaacaattcaaacctgtcaatcaatacttccaa------gt |
459 |
Q |
| |
|
|| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| ||| || |
|
|
| T |
8525832 |
tgcgaggaactgtgacatgaaaaattcaatcaatcacctggcaaaacaaaacaaaaaaagaacaattcaaacctgtcaatcaatactttcaagtcaatgt |
8525733 |
T |
|
| Q |
460 |
atataatcacactgcagcttcctagtcaacagatgaggaacaattgta |
507 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
8525732 |
atataatcacactgcagcttcctagtcaatagatgaggaacgattgta |
8525685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 544 - 681
Target Start/End: Complemental strand, 8525679 - 8525542
Alignment:
| Q |
544 |
gtatattcaattatattaagattatacattcattgaattcacgatcattctacaaatatacattcaggtgtgtaataatatgnnnnnnnnntcttaagat |
643 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8525679 |
gtatcttcaattgtatgaagattatacattcattgaattcacgatcattctacacatatacattcaggtgtgtaataatatgaaaaaaaaatcttaagat |
8525580 |
T |
|
| Q |
644 |
gactctacaatatatttcatttgtggatcgacattctc |
681 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
8525579 |
gactctacaatatatttcaattgtgcatcgacattctc |
8525542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 242 - 404
Target Start/End: Original strand, 32675361 - 32675520
Alignment:
| Q |
242 |
attaatgatatttatgtaattttatacatacacatattttataaattgggttttgtaattttctcagaaactaaaatttttcttcactttt--aaaaaat |
339 |
Q |
| |
|
||||| || |||||||||||||| | ||| ||||||||||||| ||| | ||||||||||||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
32675361 |
attaaggacatttatgtaattttgttaatagacatattttataacttgagatttgtaattttctcataaactaaaattgttcttcactttttaaaaaaat |
32675460 |
T |
|
| Q |
340 |
aaattatatgtccttgaaaaataaagtgggaggaactgtgacatgaacaattcaaccaatcacct |
404 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || |||| |||| ||||||||||||||||| |
|
|
| T |
32675461 |
aaattatatgt-cttgaaaaataaagtgggagaaattgtg--atga--aattcaaccaatcacct |
32675520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 601
Target Start/End: Complemental strand, 12251787 - 12251750
Alignment:
| Q |
564 |
attatacattcattgaattcacgatcattctacaaata |
601 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
12251787 |
attataccttcattgaattcacgatcagtctacaaata |
12251750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1041 times since January 2019
Visitors: 1289