View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-36 (Length: 617)
Name: NF0075-INSERTION-36
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-36 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 184 - 617
Target Start/End: Complemental strand, 42564231 - 42563798
Alignment:
| Q |
184 |
ctaagttttactctattgattagtcaactggagaatatgcttcacactttaaaacctgaaaagtagttggcagcattttaaaagttaaactctcacagca |
283 |
Q |
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| T |
42564231 |
ctaagttttactctattgattagtcaactggagaatatggttcacacttcaaaacctgaaaagtagttggcagcattttaaaagttaaactctcacagca |
42564132 |
T |
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| Q |
284 |
caaccaatgttttatgttagtttggcatcaaaatcccatgatatatactagtaagccagagcttgtacaataaggacttgttaatcttttatgttggttt |
383 |
Q |
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| T |
42564131 |
caaccaatgttttatgttagtttggcatcaaaatcccatgatatatactagtaagccagagcttgtacaataaggacttgttaatcttttatgttagttt |
42564032 |
T |
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| Q |
384 |
tacatgtgcactcccttaaagatggatgcatcactaggcattgaaactatgagtgtataagaaataattactccaaaagggaattactaagttaattgct |
483 |
Q |
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| T |
42564031 |
tacatgtgcactctcttaaagatggatgcatcactaggcattgaaactatgagtgtataagaaataattactccaaaagggaattactaagttaattgct |
42563932 |
T |
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| Q |
484 |
taagcacgcttgtgcatagaattagacggaatgataagatcctaaatataagagaagannnnnnnnncatgttcatttagtacgttgcatgcggtattca |
583 |
Q |
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| T |
42563931 |
taagcacgcttgtgcatagaattagacggaatgataagatcctaaatataagagaagattcttttttcaggttcatttaatacattgcatgcggtagtca |
42563832 |
T |
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| Q |
584 |
cctacgttgcatgcggtttgtaaattgcaaatca |
617 |
Q |
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| T |
42563831 |
cctacgttgcatgcggtttgtaaattgcgaatca |
42563798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 42564411 - 42564263
Alignment:
| Q |
4 |
aacaaatattgacttgttattgatcttcaactgataaatactagtaatcaattatgagcctgttctcaattggataagaattagcagtaaaatttgtatt |
103 |
Q |
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| T |
42564411 |
aacaaatattgacttgttattgatcttcaactgataaatactagtaatcaattatgagcctgttctcaattggataagaattagcagtaaaatttgtatt |
42564312 |
T |
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| Q |
104 |
ttctgtcacaattatgcagtaatcaccaatttattgcttgtattagctg |
152 |
Q |
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| T |
42564311 |
ttctgtcacaattatgcagtaatcaccaatttattgcttgtattagctg |
42564263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 7874132 - 7873987
Alignment:
| Q |
4 |
aacaaatattgacttgttattgatcttcaactgataaatactagtaatcaatta-------tgagcctgttctcaattggataagaattagcagtaaaat |
96 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||||||| |
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| T |
7874132 |
aacaaatattgactcgttattgatcttcaactgataaatactagtaatcaattatggctattgagctcgatctcaattggataagaattagtagtaaaat |
7874033 |
T |
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| Q |
97 |
ttgtat----tttctgtcacaattatgcagtaatcaccaatttatt |
138 |
Q |
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| T |
7874032 |
ttgtatgttctttttgtcacaattatgcagtaatcaccaatttatt |
7873987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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