View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-37 (Length: 731)
Name: NF0075-INSERTION-37
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-37 |
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| [»] scaffold0291 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 713; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 8 - 728
Target Start/End: Complemental strand, 7916562 - 7915842
Alignment:
| Q |
8 |
gtctacggtgaaggtgttttcaacatcagatcaaaggtttatgtgtctccaaaactatggtatttaagagtcaatgtcattgaagcgcaagatgttatcc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7916562 |
gtctacggtgaaggtgttttcaacatcagatcaaaggtttatgtgtctccaaaactatggtatttaagagtcaatgtcattgaagcacaagatgttatcc |
7916463 |
T |
|
| Q |
108 |
cgagcgacagaaaccgcttaccggaggtttctgtgaaggctcatttgggctgccaagtactgaagaccaagatttgttccactagaacaacttctccact |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7916462 |
cgagcgacagaaaccgcttaccggaggtttctgtgaaggctcatttgggctgccaagtactgaagaccaagatttgttccactagaacaacttctccact |
7916363 |
T |
|
| Q |
208 |
ttggaatgaagatttggtttttgtagcagctgaaccatttgaggagcagttgacaataactgtggaggatcatgtgcaaccttcaaaagatgaggtactt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7916362 |
ttggaatgaagatttggtttttgtagcagctgaaccatttgaggagcagttgacaataactgtggaggatcatgtgcaaccttcaaaagatgaggtactt |
7916263 |
T |
|
| Q |
308 |
gggaggataagcttacctttgaacctctttgagaagagactagaccacagaccggttcattctcgttggtttagccttgagaaatttggttttggtgcac |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7916262 |
gggaggataagcttacctttgaacctctttgagaagagactagaccacagaccggttcattctcgttggtttagccttgagaaatttggttttggtgcac |
7916163 |
T |
|
| Q |
408 |
ttgaaggtgatagaagaaatgagcagaaattttcaagtaggattcatcttagagtttgccttgaaggtggataccatgttttagatgaatccactttgta |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7916162 |
ttgaaggtgatagaagaaatgagcagaaattttcaagtaggattcatcttagagtttgccttgaaggtggataccatgttttagatgaatccactttgta |
7916063 |
T |
|
| Q |
508 |
cattagtgatcaaagaccaacagcaagacagctatggaagcagcctatcggaatacttgagatgggcatcttaggagcaaaagggcttctccctatgaag |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7916062 |
cattagtgatcaaagaccaacagcaagacagctatggaagcagcctattggaatacttgagatgggcatcttaggagcaaaagggcttctccctatgaag |
7915963 |
T |
|
| Q |
608 |
atgaaggatggtcatggtagcacagatgcatactgtgttgctaaatatggtcagaaatggatcagaacaagaacacttttagacactttcagtcccaaat |
707 |
Q |
| |
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| T |
7915962 |
atgaaggatggtcatggtagcacagatgcatactgtgttgctaaatatggtcagaaatggatcagaacaagaacacttttagacactttcagtcccaaat |
7915863 |
T |
|
| Q |
708 |
ggaatgagcaatacacatggg |
728 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
7915862 |
ggaatgagcaatacacatggg |
7915842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 537 - 668
Target Start/End: Complemental strand, 7833520 - 7833389
Alignment:
| Q |
537 |
agctatggaagcagcctatcggaatacttgagatgggcatcttaggagcaaaagggcttctccctatgaagatgaaggatggtcatggtagcacagatgc |
636 |
Q |
| |
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||||| || ||||||||| ||||||||||| || |||||||||||| |||||||||||| |||| ||| |||||||||| ||||||||||| |||||| |
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| T |
7833520 |
agctacggtagcagcctaatggaatacttgaaataggcatcttaggataaaaagggcttctgcctaagaaaatgaaggatgttcatggtagcatagatgc |
7833421 |
T |
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| Q |
637 |
atactgtgttgctaaatatggtcagaaatgga |
668 |
Q |
| |
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|||| |||| | |||||||||||| |||||| |
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| T |
7833420 |
ataccgtgtacccaaatatggtcaggaatgga |
7833389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 624
Target Start/End: Complemental strand, 7906849 - 7906801
Alignment:
| Q |
575 |
atcttaggagcaaaagggcttctccctatgaagatgaaggatggtcatgg |
624 |
Q |
| |
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|||||||||||||||| | |||| |||||||||||||||||||||||||| |
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| T |
7906849 |
atcttaggagcaaaagtg-ttctgcctatgaagatgaaggatggtcatgg |
7906801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 650 - 722
Target Start/End: Complemental strand, 7906758 - 7906686
Alignment:
| Q |
650 |
aaatatggtcagaaatggatcagaacaagaacacttttagacactttcagtcccaaatggaatgagcaataca |
722 |
Q |
| |
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||||||||||||||||||||| |||||||| |||||| |||| ||||| ||||||| ||||| ||||||| |
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| T |
7906758 |
aaatatggtcagaaatggatctaaacaagaaaacttttcgacattttcaaacccaaattaaatgaacaataca |
7906686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 5e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 207 - 728
Target Start/End: Complemental strand, 8416816 - 8416295
Alignment:
| Q |
207 |
tttggaatgaagatttggtttttgtagcagctgaaccatttgaggagcagttgacaataactgtggaggatcatgtgcaaccttcaaaagatgaggtact |
306 |
Q |
| |
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|||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||| || || |||||||||| |||||| |||||||||||||||||| |
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| T |
8416816 |
tttggaatgaagatttagtttttgtggcagccgaaccatttgaggagcaattgacgattaccgtggaggatcgtgtgcacggttcaaaagatgaggtact |
8416717 |
T |
|
| Q |
307 |
tgggaggataagcttacctttgaacctctttgagaagagactagaccacagaccggttcattctcgttggtttagccttgagaaatttggttttggtgca |
406 |
Q |
| |
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||| | ||||| ||||| |||| || ||||||||| | |||||||| || |||||||||||||| ||||| | |||||||||| |||||||| |
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| T |
8416716 |
tggaaagataatgttaccattgacactgtttgagaagcggctagaccataggccggttcattctcgatggttcaatcttgagaaatacggttttggaatg |
8416617 |
T |
|
| Q |
407 |
cttgaaggtgatagaagaaatgagcagaaattttcaagtaggattcatcttagagtttgccttgaaggtggataccatgttttagatgaatccactttgt |
506 |
Q |
| |
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| ||||||||||||||||| ||| ||||||||||| |||||||| | ||| ||||||| |||||||| |||||||| ||||||||||| ||||||| |
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| T |
8416616 |
atggaaggtgatagaagaaacgaggttaaattttcaagcaggattcacatgagaatttgcctcgaaggtggttaccatgtcttagatgaatcaactttgt |
8416517 |
T |
|
| Q |
507 |
acattagtgatcaaagaccaacagcaagacagctatggaagcagcctatcggaatacttgagatgggcatcttaggagcaaaagggcttctccctatgaa |
606 |
Q |
| |
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| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| | || |||||||||||| || |||||| || ||||| |
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| T |
8416516 |
atgcaagtgatcatagaccaacagctagacagctatggaagcagcctataggaatgcttgaagtagggatcttaggagcacaaaagcttcttccaatgaa |
8416417 |
T |
|
| Q |
607 |
gatgaaggatggtcatggtagcacagatgcatactgtgttgctaaatatggtcagaaatggatcagaacaagaacacttttagacactttcagtcccaaa |
706 |
Q |
| |
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|||||| || | | ||| ||||| ||||| ||||| || || || ||||||||||||||||||||||| ||||| || | |||||||| ||||| ||| |
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| T |
8416416 |
gatgaacaatagccgtggaagcaccgatgcgtactgcgtagccaagtatggtcagaaatggatcagaactagaactattcttgacacttttagtcctaaa |
8416317 |
T |
|
| Q |
707 |
tggaatgagcaatacacatggg |
728 |
Q |
| |
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|||||||| ||||||||||||| |
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| T |
8416316 |
tggaatgaacaatacacatggg |
8416295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 8417315 - 8417162
Alignment:
| Q |
17 |
gaaggtgttttcaacatcagatcaaaggtttatgtgtctccaaaactatggtatttaagagtcaatgtcattgaagcgcaagatgttatcccgagcgaca |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || || |||||||||||| |||| |||||||| || ||||| ||||| || || ||||||||| |
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| T |
8417315 |
gaaggtgttttcaatatcagatcaaaggtttatgtttcaccgaaactatggtatctaagggtcaatgtgatcgaagcacaagacgtgatatcgagcgaca |
8417216 |
T |
|
| Q |
117 |
gaaaccgcttaccggaggtttctgtgaaggctcatttgggctgccaagtactga |
170 |
Q |
| |
|
||||||| | || ||||||| | | || ||||| ||||| |||||||||||| |
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|
| T |
8417215 |
gaaaccgggtgccagaggtttttatcaaagctcagatgggcagccaagtactga |
8417162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 434 - 549
Target Start/End: Complemental strand, 3940 - 3825
Alignment:
| Q |
434 |
aaattttcaagtaggattcatcttagagtttgccttgaaggtggataccatgttttagatgaatccactttgtacattagtgatcaaagaccaacagcaa |
533 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||||||||| || |||||| | ||||||||||| |||| || |||||| |||| |||| || | |
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| T |
3940 |
aaattctcaagtaggattcaccttagagtttgtcttgaaggtgcttatcatgttcttgatgaatccacaatgtatataagtgatacaagaacaactgcta |
3841 |
T |
|
| Q |
534 |
gacagctatggaagca |
549 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
3840 |
gacaactatggaagca |
3825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 4360 - 4271
Alignment:
| Q |
14 |
ggtgaaggtgttttcaacatcagatcaaaggtttatgtgtctccaaaactatggtatttaagagtcaatgtcattgaagcgcaagatgtt |
103 |
Q |
| |
|
|||||||| |||| ||| || ||||||||||||||||| ||| ||||| ||||||||||| || ||||| |||||||| ||||||||| |
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|
| T |
4360 |
ggtgaaggagtttacaatattagatcaaaggtttatgttaatcctaaactttggtatttaagggttaatgtaattgaagctcaagatgtt |
4271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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