View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0075-INSERTION-38 (Length: 623)
Name: NF0075-INSERTION-38
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 364
Target Start/End: Original strand, 28450919 - 28451263
Alignment:
| Q |
7 |
acaaaaaacttaacaaacttcaacaaaattttgtaaccaacttagtttacttgttcaacaagtaaactccttaactcataaaatcatgctaactaattaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28450919 |
acaaaaaacttaacaaacttcaacaaaattttgtaaccaactta-------------acaagtaaactccttaactcataaaatcatgctaactaattaa |
28451005 |
T |
|
| Q |
107 |
ctgaattaacttcctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgctcgtctttagaga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28451006 |
ctgaattaacttcctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgctcgtctttagaga |
28451105 |
T |
|
| Q |
207 |
cttggctaacaaatatgcaatcgattcttctatcttgcgatgcttgatttccaacttatctatgtttacttgatccctaagaaaatagaaacatgtctca |
306 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28451106 |
cttggttaacaaatatgcaatcgattcttctatcttgcgatgcttgatttccaacttatctatgtttacttgatccctaagaaaatagaaacatgtctca |
28451205 |
T |
|
| Q |
307 |
atgtgtttactttttcatgaaccacttgatgctttgctaagtctaatgcatacttact |
364 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28451206 |
atgtgtttactttttcatgagccacttgatgctttgctaagtctaatgcatacttact |
28451263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 21080605 - 21080783
Alignment:
| Q |
15 |
cttaacaaacttcaacaaaattttgtaaccaacttagtttacttgttcaacaagtaaactccttaactcataaaatcatg------ctaactaattaact |
108 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| |||||||||||||||||||||| |||||||| ||| || || |||||||| |||| |
|
|
| T |
21080605 |
cttaacaaacttcaacaaaatttc-taactaactgagtttacttgttcaacaagtaactcccttaacttctaa--tcttgaactaactaactaaccaact |
21080701 |
T |
|
| Q |
109 |
gaatta--acttcctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaag |
189 |
Q |
| |
|
|||||| || ||||| ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
21080702 |
gaattataacaccctaacacacctcct-aattcattagttagtgacttcaaccatgcctaacttgttcctcaagtattaaaag |
21080783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 11352558 - 11352639
Alignment:
| Q |
269 |
tgtttacttgatccctaagaaaatagaaacatgtctcaatgtgtttactttttc-atgaaccacttgatgctttgctaagtc |
349 |
Q |
| |
|
||||||||||||| || || |||| ||||| ||||||||||||||||||| ||| |||||| | | ||||||| |||||||| |
|
|
| T |
11352558 |
tgtttacttgatctcttaggaaatggaaacgtgtctcaatgtgtttacttcttcgatgaacaattggatgcttggctaagtc |
11352639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 269 - 409
Target Start/End: Original strand, 24725121 - 24725262
Alignment:
| Q |
269 |
tgtttacttgatccctaagaaaatagaaacatgtctcaatgtgtttact-ttttcatgaaccacttgatgctttgctaagtctaatgcatacttactatc |
367 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| |||| ||||| | ||| | |||| ||||||| || |||||| ||| |||| ||||| |
|
|
| T |
24725121 |
tgtttacttgatccctaaggaaatgaaaacatgtctcattgtgcttactcctaccataagtcactggatgcttagcccagtctatagcagactttctatc |
24725220 |
T |
|
| Q |
368 |
aattagcaattacatcttctcaacttcctttagattcatttc |
409 |
Q |
| |
|
||| | |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
24725221 |
aatcaaaaattccatcttctcctcttcctttagattcatttc |
24725262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 9507566 - 9507493
Alignment:
| Q |
122 |
aatacacctccttaattcatt-agttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgct |
194 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||| || ||| ||||||| ||||||||||| |
|
|
| T |
9507566 |
aatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaaagttgct |
9507493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 27237205 - 27237130
Alignment:
| Q |
120 |
ctaatacacctccttaattca-ttagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgct |
194 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| ||||||||| || ||| ||||||| ||||||||||| |
|
|
| T |
27237205 |
ctaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaaagttgct |
27237130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 32813479 - 32813406
Alignment:
| Q |
122 |
aatacacctccttaattca-ttagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgct |
194 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||| || ||| ||||||| |||||| |||| |
|
|
| T |
32813479 |
aatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaaagctgct |
32813406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 12748922 - 12748986
Alignment:
| Q |
363 |
ctatcaattagcaattacatcttctcaacttcctttagattcatttccaacataagcatgttgat |
427 |
Q |
| |
|
||||||||||| |||| ||||||||| |||| | ||| |||||||| | ||||||||||||||| |
|
|
| T |
12748922 |
ctatcaattagtaattccatcttctcttcttcttctagcttcatttctagcataagcatgttgat |
12748986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 45485996 - 45486064
Alignment:
| Q |
122 |
aatacacctccttaattca-ttagttagtgacttcaaccattcctagattgttcctcaagtattcaaag |
189 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||| || ||| ||||||| |||||| |
|
|
| T |
45485996 |
aatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaaag |
45486064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University