View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0075-INSERTION-39 (Length: 613)
Name: NF0075-INSERTION-39
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-39 |
 | |
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| [»] chr2 (9 HSPs) |
| |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 518; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 6 - 613
Target Start/End: Original strand, 2711402 - 2712009
Alignment:
| Q |
6 |
cactcccttctccaccttctaattggaataaaaaatacaccaaaaggcatatgtctgttatctgccttgcaagcttgtggtggagacactgtttttcgag |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2711402 |
cactcccttctccatcttctaattggaataaaaaatacaccaaaaggcatatgtctgttatctgccttgcaagcttgtggtggagacactgtttttcgag |
2711501 |
T |
|
| Q |
106 |
ttgtgatttcctctatgctcagtctgacttagaaggaatgccggttgagatggaggaggcagtttaacaatctcactattaagcattgaaacaactgtgg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2711502 |
ttgtgatttcctctatgctcagtctgacttagaaggaatgccggttgagatggaggaggaagtttaacaatctcactattaagcattgaaacaactgcgg |
2711601 |
T |
|
| Q |
206 |
ccatattaggtctctcctttgcaatttcttgcacacagagaagtccaatatgtatgcatctcaaaatctgatccagacaatcaggcttacatatttctag |
305 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2711602 |
ccatagtaggtctctcctttgcaatttcttgcacacagagaagtccaatatgtatgcatctcaaaatctgatccagacaatcaggcttacatatttctag |
2711701 |
T |
|
| Q |
306 |
atctatcaaagatacaatgttctcttcaatccatattttccatgccttcnnnnnnnnnnnnnngaagaagaataaacagcatcatctatatgtatacaaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2711702 |
atctatcaaagatacaatgttctcttcaatccatattttccatgccttaaaaaaaccaaaaaagaagaagaataaacagcatcatctatatgtatacaaa |
2711801 |
T |
|
| Q |
406 |
tttgaaagagtatattattattatagcnnnnnnnntataccctatattgggcaaaattagcaatttggaaagacttacatattctaagagggtgagtgct |
505 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2711802 |
tttgaaagagtatattattattatagcaaaaaaaatataccctatattgggcaaaattagcaatttggaaagacttacatattctaagagggtgagtgct |
2711901 |
T |
|
| Q |
506 |
tgctcatgattatgaaaacttgtgtttttcctaccacttattatctccaagagcaaaactccaaaactaaaaatatctgatttctctgaaaacaaccctt |
605 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2711902 |
tgctcatgattatgaaaacttgtgttttttctaccacttattatctccaagagcaaaactccaaaactaaaaatatctgatttctctgaaaacaaccctt |
2712001 |
T |
|
| Q |
606 |
tcattgca |
613 |
Q |
| |
|
|||||||| |
|
|
| T |
2712002 |
tcattgca |
2712009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 116 - 353
Target Start/End: Original strand, 2703853 - 2704090
Alignment:
| Q |
116 |
ctctatgctcagtctgacttagaaggaatgccggttgagatggaggaggcagtttaacaatctcactattaagcattgaaacaactgtggccatattagg |
215 |
Q |
| |
|
||||||||||| ||| ||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
2703853 |
ctctatgctcaatcttgctttgaatgaatgcaggttgagatggaggaggaagtttaacaatctcactattaagcattgaaacaaatgtggccatggtagg |
2703952 |
T |
|
| Q |
216 |
tctctcctttgcaatttcttgcacacagagaagtccaatatgtatgcatctcaaaatctgatccagacaatcaggcttacatatttctagatctatcaaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| |
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|
| T |
2703953 |
tctctcctttgcaatttcttgcacacaaacaagtccaatatgtatgcatctcaaaatctgatccacataatcaggcttacatatttctggatctatcaaa |
2704052 |
T |
|
| Q |
316 |
gatacaatgttctcttcaatccatattttccatgcctt |
353 |
Q |
| |
|
|||| ||| | ||||||| |||||| |||||||||||| |
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|
| T |
2704053 |
gatataatctcctcttcattccatagtttccatgcctt |
2704090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 116 - 349
Target Start/End: Original strand, 2716468 - 2716701
Alignment:
| Q |
116 |
ctctatgctcagtctgacttagaaggaatgccggttgagatggaggaggcagtttaacaatctcactattaagcattgaaacaactgtggccatattagg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
2716468 |
ctctatgctcagtctgacttagaaggaatgcaggttgagatggatgaggaagtttaacaatctcactattaagcattgaaacaactgtggccatagtagg |
2716567 |
T |
|
| Q |
216 |
tctctcctttgcaatttcttgcacacagagaagtccaatatgtatgcatctcaaaatctgatccagacaatcaggcttacatatttctagatctatcaaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | | ||| | |||||| |||||||||||| ||||||||||| |
|
|
| T |
2716568 |
tctctcctttgcaatttcttgcacacaaagaagtccaatgtgtatgcatctcaaaatgttacccacataatcagcattacatatttcttgatctatcaaa |
2716667 |
T |
|
| Q |
316 |
gatacaatgttctcttcaatccatattttccatg |
349 |
Q |
| |
|
| ||||| | |||||| |||||| |||||||| |
|
|
| T |
2716668 |
gctacaacctcatcttcattccatagtttccatg |
2716701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 116 - 349
Target Start/End: Original strand, 2723091 - 2723324
Alignment:
| Q |
116 |
ctctatgctcagtctgacttagaaggaatgccggttgagatggaggaggcagtttaacaatctcactattaagcattgaaacaactgtggccatattagg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2723091 |
ctctatgctcagtctgacttagaaggaatgcaggttgagatggatgaggaagtttaacaatctcactattaagcattgaaacaactgtggccatagtagg |
2723190 |
T |
|
| Q |
216 |
tctctcctttgcaatttcttgcacacagagaagtccaatatgtatgcatctcaaaatctgatccagacaatcaggcttacatatttctagatctatcaaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | | ||| | |||||| |||||||||||| ||||||||||| |
|
|
| T |
2723191 |
tctctcctttgcaatttcttgcacacaaagaagtccaatgtgtatgcatctcaaaatgttacccacataatcagcattacatatttcttgatctatcaaa |
2723290 |
T |
|
| Q |
316 |
gatacaatgttctcttcaatccatattttccatg |
349 |
Q |
| |
|
| ||||| | |||||| |||||| |||||||| |
|
|
| T |
2723291 |
gctacaacctcatcttcattccatagtttccatg |
2723324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 116 - 349
Target Start/End: Original strand, 2744922 - 2745155
Alignment:
| Q |
116 |
ctctatgctcagtctgacttagaaggaatgccggttgagatggaggaggcagtttaacaatctcactattaagcattgaaacaactgtggccatattagg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2744922 |
ctctatgctcagtctgacttagaaggaatgcaggttgagatggatgaggaagtttaacaatctcactattaagcattgaaacaactgtggccatagtagg |
2745021 |
T |
|
| Q |
216 |
tctctcctttgcaatttcttgcacacagagaagtccaatatgtatgcatctcaaaatctgatccagacaatcaggcttacatatttctagatctatcaaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | | ||| | |||||| |||||||||||| ||||||||||| |
|
|
| T |
2745022 |
tctctcctttgcaatttcttgcacacaaagaagtccaatgtgtatgcatctcaaaatgttacccacataatcagcattacatatttcttgatctatcaaa |
2745121 |
T |
|
| Q |
316 |
gatacaatgttctcttcaatccatattttccatg |
349 |
Q |
| |
|
| ||||| | |||||| |||||| |||||||| |
|
|
| T |
2745122 |
gctacaacctcatcttcattccatagtttccatg |
2745155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 474 - 613
Target Start/End: Original strand, 2716790 - 2716926
Alignment:
| Q |
474 |
aaagacttacatattctaagagggtgagtgcttgctcatgattatgaaaacttgtgtttttcctaccacttattatctccaagagcaaaactccaaaact |
573 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2716790 |
aaagacttacatatcctaagagagtgagtgcttg---atgattatagaaacttgtatttttcctaccacttattatctccaagagcaaaaccccaaaact |
2716886 |
T |
|
| Q |
574 |
aaaaatatctgatttctctgaaaacaaccctttcattgca |
613 |
Q |
| |
|
||| | ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
2716887 |
aaatacatctgatttctctgaaaacaatccttccattgca |
2716926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 474 - 613
Target Start/End: Original strand, 2745243 - 2745379
Alignment:
| Q |
474 |
aaagacttacatattctaagagggtgagtgcttgctcatgattatgaaaacttgtgtttttcctaccacttattatctccaagagcaaaactccaaaact |
573 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2745243 |
aaagacttacatatcctaagagagtgagtgcttg---atgattatagaaacttgtatttttcctaccacttattatctccaagagcaaaaccccaaaact |
2745339 |
T |
|
| Q |
574 |
aaaaatatctgatttctctgaaaacaaccctttcattgca |
613 |
Q |
| |
|
||| | |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
2745340 |
aaatacatctgatttctctgaaaacagcccttccattgca |
2745379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 476 - 612
Target Start/End: Original strand, 2704222 - 2704358
Alignment:
| Q |
476 |
agacttacatattctaagagggtgagtgcttgctcatgattatgaaaacttgtgtttttcctaccacttattatctccaagagcaaaactccaaaactaa |
575 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||||| |||| |||||||||||| |||||||||||||||||||| | ||||||||| ||||| |||| |
|
|
| T |
2704222 |
agacttacatatcctaagaggttaagtgcttgctcatggttataaaaacttgtgttcttcctaccacttattatctcgaggagcaaaaccccaaagctaa |
2704321 |
T |
|
| Q |
576 |
aaatatctgatttctctgaaaacaaccctttcattgc |
612 |
Q |
| |
|
||| |||||||||||||||||||||||| | |||||| |
|
|
| T |
2704322 |
aaacatctgatttctctgaaaacaacccctccattgc |
2704358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 475 - 613
Target Start/End: Original strand, 2723414 - 2723549
Alignment:
| Q |
475 |
aagacttacatattctaagagggtgagtgcttgctcatgattatgaaaacttgtgtttttcctaccacttattatctccaagagcaaaactccaaaacta |
574 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2723414 |
aagacttacatatcctaagagagtgagtgcttg---atgattatagaaacttgtatttttcctaccacttattatctccaagagcaaaaccccaaaacta |
2723510 |
T |
|
| Q |
575 |
aaaatatctgatttctctgaaaacaaccctttcattgca |
613 |
Q |
| |
|
|| | |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
2723511 |
aatacatctgatttctctgaaaacagcccttccattgca |
2723549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 559 - 613
Target Start/End: Complemental strand, 20285189 - 20285135
Alignment:
| Q |
559 |
caaaactccaaaactaaaaatatctgatttctctgaaaacaaccctttcattgca |
613 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| || |||| ||||||| |
|
|
| T |
20285189 |
caaaacaccaaaactaaaaaaatctgatttctctgaaaataatccttgcattgca |
20285135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 559 - 613
Target Start/End: Complemental strand, 20294906 - 20294852
Alignment:
| Q |
559 |
caaaactccaaaactaaaaatatctgatttctctgaaaacaaccctttcattgca |
613 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||||||||||| || |||| ||||||| |
|
|
| T |
20294906 |
caaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgca |
20294852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 613
Target Start/End: Complemental strand, 20231808 - 20231752
Alignment:
| Q |
557 |
agcaaaactccaaaactaaaaatatctgatttctctgaaaacaaccctttcattgca |
613 |
Q |
| |
|
||||| || ||||| ||||||| |||||||||||||||||| || |||| ||||||| |
|
|
| T |
20231808 |
agcaatacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgca |
20231752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 613
Target Start/End: Complemental strand, 20243880 - 20243824
Alignment:
| Q |
557 |
agcaaaactccaaaactaaaaatatctgatttctctgaaaacaaccctttcattgca |
613 |
Q |
| |
|
||||| || ||||| ||||||| |||||||||||||||||| || |||| ||||||| |
|
|
| T |
20243880 |
agcaatacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgca |
20243824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 36376912 - 36376868
Alignment:
| Q |
224 |
ttgcaatttcttgcacacagagaagtccaatatgtatgcatctca |
268 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
36376912 |
ttgcattttcttgcacacacagaagtccaatttgaatgcatctca |
36376868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 36401632 - 36401588
Alignment:
| Q |
224 |
ttgcaatttcttgcacacagagaagtccaatatgtatgcatctca |
268 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
36401632 |
ttgcattttcttgcacacacagaagtccaatttgaatgcatctca |
36401588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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