View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0075-INSERTION-4 (Length: 516)

Name: NF0075-INSERTION-4
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0075-INSERTION-4
NF0075-INSERTION-4
[»] chr2 (9 HSPs)
chr2 (246-470)||(1355983-1356212)
chr2 (141-193)||(1356208-1356260)
chr2 (161-232)||(1362995-1363064)
chr2 (388-451)||(532157-532221)
chr2 (8-40)||(1356362-1356394)
chr2 (320-356)||(1362856-1362892)
chr2 (430-466)||(5095807-5095843)
chr2 (399-462)||(18182498-18182562)
chr2 (397-451)||(3094282-3094337)
[»] chr6 (2 HSPs)
chr6 (393-466)||(28606565-28606639)
chr6 (399-470)||(15057105-15057177)
[»] chr3 (5 HSPs)
chr3 (396-466)||(26960932-26961003)
chr3 (415-466)||(53299822-53299873)
chr3 (415-453)||(53299719-53299757)
chr3 (414-451)||(30675008-30675045)
chr3 (434-466)||(48342310-48342342)
[»] chr5 (3 HSPs)
chr5 (415-466)||(5998542-5998593)
chr5 (415-469)||(34394678-34394732)
chr5 (390-466)||(20986548-20986625)
[»] chr8 (2 HSPs)
chr8 (399-467)||(3647478-3647547)
chr8 (430-466)||(10591487-10591523)
[»] chr4 (5 HSPs)
chr4 (386-466)||(29821311-29821392)
chr4 (406-451)||(13837849-13837895)
chr4 (399-451)||(13837989-13838042)
chr4 (430-466)||(11392392-11392428)
chr4 (403-466)||(35297469-35297533)
[»] chr7 (8 HSPs)
chr7 (415-470)||(16648905-16648960)
chr7 (415-470)||(17623266-17623321)
chr7 (415-454)||(33491196-33491235)
chr7 (393-470)||(16648783-16648861)
chr7 (393-470)||(17623144-17623222)
chr7 (415-451)||(6980966-6981002)
chr7 (430-466)||(32315735-32315771)
chr7 (405-449)||(48583288-48583332)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 246 - 470
Target Start/End: Complemental strand, 1356212 - 1355983
Alignment:
Q  246 gaatattaagagcatcttttgccatctaactaagaggtaaatttcctaccttagtaatannnnnnnnnn-acattcatgaatccaagaattaaatacaaa 344  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||           ||||||||||||||||||||||||||||||    
T  1356212 gaatattaagagcatcttttgccatctaactaagaggtaaattttcttccttagtaatatttttttttttacattcatgaatccaagaattaaatacaaa 1356113  T
Q  345 atagcatagttacagattagaatttcttctacccaccaacaaattttcggaaaacacttaggtgacatt-tggtgtcaatgtcatct---gacattggcc 440  Q
    ||||||||| || |||||||||||||||||||||||||||| |||||||||||||| || |||||||||  ||||||||||||||||   ||||||||||    
T  1356112 atagcataggtagagattagaatttcttctacccaccaacacattttcggaaaacatttgggtgacattggggtgtcaatgtcatctgacgacattggcc 1356013  T
Q  441 aaccacaatgtcataaatgtacaaaatgac 470  Q
    ||||||||||||| || |||||||||||||    
T  1356012 aaccacaatgtcacaagtgtacaaaatgac 1355983  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 1356260 - 1356208
Alignment:
Q  141 tattacttatttatatctgttcttgaatttcttatttgcacttcagttgaata 193  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1356260 tattatttatttatatctgttcttgaatttcttatttgcacttcagttgaata 1356208  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 1363064 - 1362995
Alignment:
Q  161 tcttgaatttcttatttgcacttcagttgaatacatatatgacaactggtttctaattttgtttgttttctt 232  Q
    |||||||||||||| ||||||||||| ||||||  ||| |||||||||||||||||||||||||| ||||||    
T  1363064 tcttgaatttcttagttgcacttcaggtgaata--tatttgacaactggtttctaattttgtttgctttctt 1362995  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 532157 - 532221
Alignment:
Q  388 ttttcggaaaacacttaggtgacatt-tggtgtcaatgtcatctgacattggccaaccacaatgt 451  Q
    |||| ||| ||||||| ||||||||  ||||| ||||||||| ||||||||||||||||||||||    
T  532157 ttttgggacaacacttgggtgacatggtggtgccaatgtcatgtgacattggccaaccacaatgt 532221  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 1356394 - 1356362
Alignment:
Q  8 acaatttgtttaaaagtttagagagccaattaa 40  Q
    |||||||||||||||||||||||||||||||||    
T  1356394 acaatttgtttaaaagtttagagagccaattaa 1356362  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 1362892 - 1362856
Alignment:
Q  320 catgaatccaagaattaaatacaaaatagcatagtta 356  Q
    ||||||||||||||||| |||||||||||||||||||    
T  1362892 catgaatccaagaattatatacaaaatagcatagtta 1362856  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 466
Target Start/End: Complemental strand, 5095843 - 5095807
Alignment:
Q  430 tgacattggccaaccacaatgtcataaatgtacaaaa 466  Q
    |||||||||||||||||||||||| ||||||||||||    
T  5095843 tgacattggccaaccacaatgtcacaaatgtacaaaa 5095807  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 462
Target Start/End: Original strand, 18182498 - 18182562
Alignment:
Q  399 cacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtac 462  Q
    ||||| ||||||||| || || ||||||||| |||||||||||||||||||||||| || |||||    
T  18182498 cacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatgtcacaagtgtac 18182562  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 451
Target Start/End: Complemental strand, 3094337 - 3094282
Alignment:
Q  397 aacacttaggtgacatt-tggtgtcaatgtcatctgacattggccaaccacaatgt 451  Q
    |||||||||| |||||| ||||||||||||||| ||||||||| |||| |||||||    
T  3094337 aacacttaggcgacattgtggtgtcaatgtcatgtgacattggtcaactacaatgt 3094282  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 393 - 466
Target Start/End: Complemental strand, 28606639 - 28606565
Alignment:
Q  393 ggaaaacacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 466  Q
    ||||||||||| ||||||||| || || ||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  28606639 ggaaaacacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatgtcttaagtgtacaaaa 28606565  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 470
Target Start/End: Complemental strand, 15057177 - 15057105
Alignment:
Q  399 cacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaatgac 470  Q
    ||||| ||||||||| || |||||||||||| |||||||||||||||| ||| ||| || |||||||||||||    
T  15057177 cactttggtgacattggggtgtcaatgtcatgtgacattggccaaccaaaatatcacaagtgtacaaaatgac 15057105  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 466
Target Start/End: Complemental strand, 26961003 - 26960932
Alignment:
Q  396 aaacacttaggtgacattt-ggtgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 466  Q
    |||||||| |||||||||  |||||||||||||| |||||||||||||||||||||||| || |||| ||||    
T  26961003 aaacacttgggtgacattgaggtgtcaatgtcatgtgacattggccaaccacaatgtcacaagtgtagaaaa 26960932  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 466
Target Start/End: Complemental strand, 53299873 - 53299822
Alignment:
Q  415 ggtgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 466  Q
    |||||||||||||  |||||||||||||||||||||||| || |||||||||    
T  53299873 ggtgtcaatgtcacgtgacattggccaaccacaatgtcacaagtgtacaaaa 53299822  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 453
Target Start/End: Original strand, 53299719 - 53299757
Alignment:
Q  415 ggtgtcaatgtcatctgacattggccaaccacaatgtca 453  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  53299719 ggtgtcaatgtcacatgacattggccaaccacaatgtca 53299757  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 30675045 - 30675008
Alignment:
Q  414 tggtgtcaatgtcatctgacattggccaaccacaatgt 451  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  30675045 tggtgtcaatgtcatgtgacattagccaaccacaatgt 30675008  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 466
Target Start/End: Complemental strand, 48342342 - 48342310
Alignment:
Q  434 attggccaaccacaatgtcataaatgtacaaaa 466  Q
    |||||||||||||||||||| ||||||||||||    
T  48342342 attggccaaccacaatgtcacaaatgtacaaaa 48342310  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 466
Target Start/End: Original strand, 5998542 - 5998593
Alignment:
Q  415 ggtgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 466  Q
    |||||||||||||| ||||||||| |||||||||||||| || |||||||||    
T  5998542 ggtgtcaatgtcatgtgacattggtcaaccacaatgtcagaagtgtacaaaa 5998593  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 469
Target Start/End: Original strand, 34394678 - 34394732
Alignment:
Q  415 ggtgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaatga 469  Q
    |||| |||||| || ||||||||| |||||||||||||| || ||||||||||||    
T  34394678 ggtgccaatgtgatgtgacattggtcaaccacaatgtcacaagtgtacaaaatga 34394732  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 466
Target Start/End: Complemental strand, 20986625 - 20986548
Alignment:
Q  390 ttcggaaaacacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 466  Q
    |||||| ||||||| ||||||||| || || ||||||||| ||| |||| ||||| |||||||||||| ||| |||||    
T  20986625 ttcggataacactttggtgacattgggatgccaatgtcatgtgatattgaccaactacaatgtcataagtgtgcaaaa 20986548  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 3647547 - 3647478
Alignment:
Q  399 cacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaat 467  Q
    ||||| ||||||||| || || ||||||||| ||||||||||||||||||||| || || ||||||||||    
T  3647547 cacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatgacacaagtgtacaaaat 3647478  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 466
Target Start/End: Original strand, 10591487 - 10591523
Alignment:
Q  430 tgacattggccaaccacaatgtcataaatgtacaaaa 466  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  10591487 tgacattagccaaccacaatgtcataaatgtataaaa 10591523  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 29821311 - 29821392
Alignment:
Q  386 aattttcggaaaacacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 466  Q
    ||||| |||||||||||| ||||||| | || || |||||||||  ||| ||||||||||||||||||| || |||||||||    
T  29821311 aatttacggaaaacacttgggtgacaatggggtgccaatgtcatgggaccttggccaaccacaatgtcacaagtgtacaaaa 29821392  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 451
Target Start/End: Original strand, 13837849 - 13837895
Alignment:
Q  406 gtgacatt-tggtgtcaatgtcatctgacattggccaaccacaatgt 451  Q
    |||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  13837849 gtgacattgtggtgccaatgtcatgtgacattggccaaccacaatgt 13837895  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 451
Target Start/End: Complemental strand, 13838042 - 13837989
Alignment:
Q  399 cacttaggtgacatt-tggtgtcaatgtcatctgacattggccaaccacaatgt 451  Q
    |||||| |||||||| ||||  ||||||||||||||||||| ||||||||||||    
T  13838042 cacttatgtgacattgtggttccaatgtcatctgacattggtcaaccacaatgt 13837989  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 466
Target Start/End: Complemental strand, 11392428 - 11392392
Alignment:
Q  430 tgacattggccaaccacaatgtcataaatgtacaaaa 466  Q
    |||||||||||||||||||||||| || |||||||||    
T  11392428 tgacattggccaaccacaatgtcacaagtgtacaaaa 11392392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 466
Target Start/End: Original strand, 35297469 - 35297533
Alignment:
Q  403 taggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 466  Q
    |||||||||||||| | |||||| ||| |||||||| ||||||||||| ||| || |||||||||    
T  35297469 taggtgacatttgggtttcaatgacatgtgacattgaccaaccacaatatcacaagtgtacaaaa 35297533  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 470
Target Start/End: Complemental strand, 16648960 - 16648905
Alignment:
Q  415 ggtgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaatgac 470  Q
    |||| ||||||||| |||||||||| ||||||||| ||| || |||||||||||||    
T  16648960 ggtgccaatgtcatgtgacattggcaaaccacaatttcacaagtgtacaaaatgac 16648905  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 470
Target Start/End: Complemental strand, 17623321 - 17623266
Alignment:
Q  415 ggtgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaatgac 470  Q
    |||| ||||||||| |||||||||| ||||||||| ||| || |||||||||||||    
T  17623321 ggtgccaatgtcatgtgacattggcaaaccacaatatcacaagtgtacaaaatgac 17623266  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 454
Target Start/End: Original strand, 33491196 - 33491235
Alignment:
Q  415 ggtgtcaatgtcatctgacattggccaaccacaatgtcat 454  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  33491196 ggtgccaatgtcatgtgacattggccaaccacaatgtcat 33491235  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 470
Target Start/End: Original strand, 16648783 - 16648861
Alignment:
Q  393 ggaaaacacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaatgac 470  Q
    ||||||||||| ||||||||  || |||||||||||| ||||||||| |||||||||| ||| ||  ||| ||||||||    
T  16648783 ggaaaacacttgggtgacatcgggatgtcaatgtcatgtgacattggtcaaccacaatatcacaagcgtataaaatgac 16648861  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 470
Target Start/End: Original strand, 17623144 - 17623222
Alignment:
Q  393 ggaaaacacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaatgac 470  Q
    ||||||||||| ||||||||  || |||||||||||| ||||||||| |||||||||| ||| ||  ||| ||||||||    
T  17623144 ggaaaacacttgggtgacatcgggatgtcaatgtcatgtgacattggtcaaccacaatatcacaagcgtataaaatgac 17623222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 451
Target Start/End: Complemental strand, 6981002 - 6980966
Alignment:
Q  415 ggtgtcaatgtcatctgacattggccaaccacaatgt 451  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  6981002 ggtgccaatgtcatgtgacattggccaaccacaatgt 6980966  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 466
Target Start/End: Original strand, 32315735 - 32315771
Alignment:
Q  430 tgacattggccaaccacaatgtcataaatgtacaaaa 466  Q
    |||||||||||||||||||||||| || |||||||||    
T  32315735 tgacattggccaaccacaatgtcacaattgtacaaaa 32315771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 449
Target Start/End: Original strand, 48583288 - 48583332
Alignment:
Q  405 ggtgacatttggtgtcaatgtcatctgacattggccaaccacaat 449  Q
    |||||||||  ||| ||||||||| ||||||||||||||||||||    
T  48583288 ggtgacattatgtgccaatgtcatgtgacattggccaaccacaat 48583332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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