View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-40 (Length: 762)
Name: NF0075-INSERTION-40
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-40 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 7 - 736
Target Start/End: Complemental strand, 52583403 - 52582678
Alignment:
| Q |
7 |
actaccatcaaataggaaagaagtagtatcatcttttgaaatgatagcaggtttgggagctgcaaagtgttacactgctctggcacttcaagcaatgtct |
106 |
Q |
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| T |
52583403 |
actaccatcaaatgg--aagaagtagtatcatcttttgaaatgatagcaggtttgggagctgcaaagtgttacactgctctggcacttcaagcaatgtct |
52583306 |
T |
|
| Q |
107 |
aggcatttttgtagcttaagagatgccataatgtcccaaataaatgctgagaaaagaaaactgtttcaggatgtacctaaaattaatagtggattgtctc |
206 |
Q |
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| T |
52583305 |
aggcatttttgtagcttaagagatgccataatgtcccaaataaatgctgagaaaagaaaactgtttcaggatgtacctaaaattaatagtggattgtctc |
52583206 |
T |
|
| Q |
207 |
aactgagcttatttgagagagataataatagacagactagaatgtctctccaacaacttggagtcattcaaaaccaacgacaagtttggagacctattag |
306 |
Q |
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| T |
52583205 |
aactgagcttatttgagagagataataatagacagactagaatgtctctccaacaacttggagtcattcaaaaccaacgacaagtttggagacctattag |
52583106 |
T |
|
| Q |
307 |
agggttacctgaaacatctgtagcaattcttcgtgcttggctctttgagcactttcttcatccgtaagcttatatcaaaattctgtttttgtttttatgt |
406 |
Q |
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| T |
52583105 |
agggttacctgaaacatctgtagcaattcttcgtgcttggctctttgagcactttcttcatccgtaagcttatatcaaaattctgtttttgtttttatgt |
52583006 |
T |
|
| Q |
407 |
tatgtcattttcttgtcttattaatgaaatgctaatttgatgtctgatttttgcagctatcctaatgattctgagaagttaatcctggcttcccaaacag |
506 |
Q |
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| T |
52583005 |
tatgtcattttcttgtcttattaatgaaatgctaatttgatgtctgatttttgcagctatcctaatgattctgagaagttaatcctggcttcccaaacag |
52582906 |
T |
|
| Q |
507 |
gtttaaccaaaaaccaagtaattccttatccaaaaactacccctttccnnnnnnnctaatgatatgttaatttagcctcttaagcatttattatagtagt |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52582905 |
gtttaaccaaaaaccaagtaattccttatccaaaaactacccctttcctttttttcta---atatgttaatttagcctcttaagcatttattatagtagt |
52582809 |
T |
|
| Q |
607 |
agagactaaggcgacaaatttctttcactttttcttttatgggtaggaatcgagttagggtctcaaatttacaacaatcacatatagtgcacgtcgataa |
706 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52582808 |
agagactaaggcgacaaatttctttcactttttcttttatgggtaggaatcaagttagggtctcaaatttacaacaatcacatacagtgcacgtcgataa |
52582709 |
T |
|
| Q |
707 |
attccgac-aaataaaacacttcaaacatta |
736 |
Q |
| |
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|||||||| |||||||||||||||||||||| |
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| T |
52582708 |
attccgacaaaataaaacacttcaaacatta |
52582678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 43242935 - 43242984
Alignment:
| Q |
305 |
agagggttacctgaaacatctgtagcaattcttcgtgcttggctctttga |
354 |
Q |
| |
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||||| |||||||||| ||||||| | |||||||||||||||||||||| |
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| T |
43242935 |
agaggattacctgaaagatctgtatctgttcttcgtgcttggctctttga |
43242984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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