View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-41 (Length: 427)
Name: NF0075-INSERTION-41
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-41 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 40405674 - 40406098
Alignment:
| Q |
1 |
gaaagtgcatttacttgaagaaacaaagtatccaacttctgaagcttacccaactccggtggcacttcaccggttaaaccacagtaagcagcatcaaatc |
100 |
Q |
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| T |
40405674 |
gaaagtgcatttacttgaagaaacaaagtatccaacttctgaagcttacccaactccggtggcacttcaccggttaaaccacagtaagcagcatcaaatc |
40405773 |
T |
|
| Q |
101 |
tcaccatctccgacaaatttcctatctccggtggaataccaccgtcgtaggtgttgtagtaaccaatgtaaagctctttaagagaagtaatgttaccaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40405774 |
tcaccatctccgacaaatttcctatctccggtggaataccaccgtcgtaggtgttgtagtaaccaatgtaaagctctttaagagaagtaatgttaccaat |
40405873 |
T |
|
| Q |
201 |
ctccggtggaatgtgaccggaaagttcattaccagaaacagcaagatattctaaatgagtccaagagccatactccggtggtatttttccggtgaagaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40405874 |
ctccggtggaatgtgaccggaaagttcattaccagaaacagcaagatattctaaatgagtccaagagccatactccggtggtatttttccggtgaagaag |
40405973 |
T |
|
| Q |
301 |
ttaccaccaagatgc-aatggcggagaaaagaaagatgggtgaccgaaacaggaagtgaaccgggtcatgttgttgttgtaagaggtcaagaacttg-ag |
398 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| || |
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| T |
40405974 |
ttaccaccaagatgcaaatggcggagaaaagaaagatgggtgaccgaaacaggaagtgaacc-ggtcatgttgttgttgt-agaggtcaagaacttgaag |
40406071 |
T |
|
| Q |
399 |
attg-agaggttagagagttcttgagg |
424 |
Q |
| |
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|||| |||||||||||||||||||||| |
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|
| T |
40406072 |
attgaagaggttagagagttcttgagg |
40406098 |
T |
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