View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-42 (Length: 434)
Name: NF0075-INSERTION-42
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-42 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 27455605 - 27455188
Alignment:
| Q |
1 |
attaatccccacaaaaacaaaactctacccaatatatatgagctcgagaagcaacaaatcattaaccgtgtaatcctaaacttaattatctcaaggatct |
100 |
Q |
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| T |
27455605 |
attaatccgcacaaaaacaaaactctacccaatat----gagctcgagaagcaacaaatcattaaccgtgtaatcctaaacttaattatctcaaggatct |
27455510 |
T |
|
| Q |
101 |
ggctaatgttgatgtcattttgacaaaaaataacattattttgagattttgatatagaccatacacaagctaactagagtaagaaattttttcgcgcaac |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27455509 |
ggctaacgttgatgtcattttgacaaaaaataacattattttgagattttgatatagaccatacacaagctaactagagtaagaaattttt-cgcgcaac |
27455411 |
T |
|
| Q |
201 |
accctcccaccatgaatcaacttatagagaagaaaaattatgattatattctttggtcttctttattcctctagaaaacaaaattctttgagatcgacta |
300 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |
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| T |
27455410 |
accctcccaccatgaatcaacttatagagaaaaaaaattatgattatattctttggtcttctttattcctctagaaaacaaaactctttgacatcgatta |
27455311 |
T |
|
| Q |
301 |
tactcttcttgtcatcttcatgtttcttacactcctcccctatattgaatacatcatcctcatgttttaataagtgtcaaaccaaaccnnnnnnnaacat |
400 |
Q |
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| T |
27455310 |
tactcttcttgtcatcttcatgtttcttaccctcctcccctcgattgaatacatcatcctcatgtttt-ataagtgtcaaaccaaacc-ttttttaacat |
27455213 |
T |
|
| Q |
401 |
ttgaatcattttgtttaacgtctttg |
426 |
Q |
| |
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| T |
27455212 |
ttgaatcattttg-ttaacgtctttg |
27455188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 254 - 426
Target Start/End: Complemental strand, 27445624 - 27445455
Alignment:
| Q |
254 |
tggtcttctttattcctctagaaaacaaaattctttgagatcgactatactcttcttgtcatcttcatgtttcttacactcctcccctatattgaataca |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27445624 |
tggtcttctttattcctctagaaaacaaaattctttgagatcgactatactcttcttgtcatcttcatgtttcttacactcctcccctctattgaataca |
27445525 |
T |
|
| Q |
354 |
tcatcctcatgttttaataagtgtcaaaccaaaccnnnnnnnaacatttgaatcattttgtttaacgtctttg |
426 |
Q |
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| T |
27445524 |
tcatcctcatgtttt-ataagtgtcaaaccaaacc-ttttttaacatttgaatcattttg-ttaacgtctttg |
27445455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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