View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-43 (Length: 574)
Name: NF0075-INSERTION-43
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-43 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 47079541 - 47078963
Alignment:
| Q |
1 |
gttagattttgtaaaaacaactttaaaataagttgaatgtgaatgaaactatgtagcaccaacacttctgattgtagatgtgtttgttattcaacacatg |
100 |
Q |
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| T |
47079541 |
gttagattttgtaaaaacaactttaagataagttgaatgtgaatgaaactatgtagcaccaacacttctgattgaagatttgttcgttattcaacccatg |
47079442 |
T |
|
| Q |
101 |
ccaatgtcagacactactgacatgacaattgtgattacactcaattacgtcattttcttacattattatcg---------tcg---gagtttgtgttgtc |
188 |
Q |
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| T |
47079441 |
ccaatgtcagacaccgctgacatgacaattgtgattacactcaattacgtcgttttcttatattattatcggttgtcgattcgtaagagtttgtgttgtc |
47079342 |
T |
|
| Q |
189 |
tgacaataagtgaccgagaatgataaattcaggttgaataatatatttataactaaacaattacaactattcgagagattagtctctgcatacaaaaatg |
288 |
Q |
| |
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| T |
47079341 |
tgacaataagtgaccgagaatgataaatttgggttgaataatatatttataactaaacaattacaattattcgagagattagtctctgcatacaaaaatg |
47079242 |
T |
|
| Q |
289 |
ctaacttcaaaataaaataattctaaagatcaaatcaattacatttgacatcatccaaacatgtcataatcatttttacaagtatggaattaatttttga |
388 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47079241 |
ctaacttcaaaataaaataattctaaagatcaaatcaattacatttgacatcatccaaacatgtcataatcatttttacaagtatggaattaatttttga |
47079142 |
T |
|
| Q |
389 |
atcatcaaaacccaactgtaattggtaagaagataagtaaagtttggttaaagatttttcccaactaagattcaaactcaggcaccccagtcgattaatt |
488 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47079141 |
atcatcaaaatccagctgtaattggtaagaagataagtaaagtttggttaaagatttttcccaactaagattcaaaatcaggcaccccagtcgattaatt |
47079042 |
T |
|
| Q |
489 |
gttaactatttcctatatataaattgctttatatatttatttgataatcatgataaaattaaattaattgttacataaag |
568 |
Q |
| |
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|
| T |
47079041 |
gttaactatttcctatatataaattgctttatatatttatttgataatcatgat-aaattaaattaattgttacataaag |
47078963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 32827500 - 32827460
Alignment:
| Q |
320 |
aaatcaattacatttgacatcatccaaacatgtcataatca |
360 |
Q |
| |
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||||||||| || |||||||||||||||||||||| ||||| |
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| T |
32827500 |
aaatcaatttcaattgacatcatccaaacatgtcaaaatca |
32827460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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