View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0075-INSERTION-44 (Length: 161)
Name: NF0075-INSERTION-44
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-44 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 135; Significance: 1e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 38176202 - 38176340
Alignment:
| Q |
1 |
catgtaccttattttgaagatcacccagcatgacaagtccttaatgtaactttttggaattttatcttctgatccagaaactccttaaataccagtagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38176202 |
catgtaccttattttgaagatcacccagcatgacaagtccttaatgtaactttttggaattttatcttctgatccagaaacttcttaaataccagtagtt |
38176301 |
T |
|
| Q |
101 |
gttaataagtttttaccatccatccctactaaacatatt |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176302 |
gttaataagtttttaccatccatccctactaaacatatt |
38176340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 49109343 - 49109461
Alignment:
| Q |
1 |
catgtaccttattttgaagatcacccagcatgacaagtccttaatgtaactttttggaattttatcttctgatccagaaactccttaaataccagtagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| |||| ||||||||||| ||||||||| |||||| |
|
|
| T |
49109343 |
catgtaccttattttgaagatcacccagcatgacaagtccttaatataacattttgaaattttaatttctaatccagaaacttcttaaatactagtagta |
49109442 |
T |
|
| Q |
101 |
gttaataagtttttaccat |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
49109443 |
gttaataagtttttaccat |
49109461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 49534284 - 49534402
Alignment:
| Q |
1 |
catgtaccttattttgaagatcacccagcatgacaagtccttaatgtaactttttggaattttatcttctgatccagaaactccttaaataccagtagtt |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||| || ||||||||| ||||||| |
|
|
| T |
49534284 |
catgtaccttactttgaagatcatccaccatgacaagtccttaatgtaactttttgaaattttaacttctaatccagaatcttcttaaatactagtagtt |
49534383 |
T |
|
| Q |
101 |
gttaataagtttttaccat |
119 |
Q |
| |
|
| ||| ||||||||||||| |
|
|
| T |
49534384 |
gctaacaagtttttaccat |
49534402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 773 times since January 2019
Visitors: 1284