View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075-INSERTION-45 (Length: 626)
Name: NF0075-INSERTION-45
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-45 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 3929200 - 3929657
Alignment:
| Q |
8 |
gtaacataccagacacatgtgtttttgtcacgaaatgtttgacaaattataacagtatcacttaataagatttaaaagacttatgtgagacaaaacttga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3929200 |
gtaacataccagacacatgtgtttttgtcacgaaatgtttgacaaattataacagtatcacttaataagatttaaaagacttatgtgagacaaaacttga |
3929299 |
T |
|
| Q |
108 |
aaacatattttgtttttcgttaagagttattagcaacttcaataaattgcaatattggcaaaatataagcttacatcagatggttggtggcaatattgga |
207 |
Q |
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| T |
3929300 |
aaacatattttgtttttcgttaagagttattagcaacttcaataaattgcaatattggcaaaatataagcttacatcagatggttggtgacaatattgga |
3929399 |
T |
|
| Q |
208 |
ctattggtactaatgcacaaggaatgatgaaatgtggttgttttgcattatgcagatgatctaacatcagatgcagccttggatccagcgggtttagtgg |
307 |
Q |
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| T |
3929400 |
ctattggtactaatgcacaaggaatgatgaaatgtggttgttttgcattatgcagatgatctaacatcagatgcagccttggatccagcgggtttagtgg |
3929499 |
T |
|
| Q |
308 |
cagtagctgtggctcatgcatttgcactatttgttggtgtggccatagcagccaacatctcaggtggacatttgaacccagctgttacttttggattagc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3929500 |
cagtagctgtggctcatgcatttgcactatttgttggtgtggccatagcagccaacatctcaggtggacatttgaacccagctgttacttttggattagc |
3929599 |
T |
|
| Q |
408 |
cattggaggcaacatcaccatcctaactggtctcttctattgnattgcccaattgctt |
465 |
Q |
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| T |
3929600 |
cattggaggcaacatcaccatcctaactggtctcttctattggattgcccaattgctt |
3929657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 457 - 626
Target Start/End: Original strand, 3928986 - 3929158
Alignment:
| Q |
457 |
caattgcttacagtaagtagtgct-aagtctaactaacttcnnnnnnnnnnnnnnngtagctttanaggttatcatcgattcntcgtccaatttatgaaa |
555 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||| |||||||||||| |||| |
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| T |
3928986 |
caattgcttacagtaagtagtgctcaagtctaactaacttcttttttatcttttttgtagctttaaaggttatcgtcgattcgtcgtccaatttacgaaa |
3929085 |
T |
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| Q |
556 |
atctcataaacaactttnctaantcttctct--cacaatatttgtctcgaatcgtttaantnaattttaaaat |
626 |
Q |
| |
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|||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| | ||||||||||| |
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| T |
3929086 |
atctcataaacaacttccctaattcttctctcacacaatatttgtctcgaatcgtttaagttaattttaaaat |
3929158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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