View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0075-INSERTION-47 (Length: 536)
Name: NF0075-INSERTION-47
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-47 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 42564403 - 42564866
Alignment:
| Q |
1 |
atatttgctcacaagtttggttttagaaggccataattacctaaacctgcagcctaatgttttaaagatgtgttatgtcctgaa-gaaagtatttgaacc |
99 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
42564403 |
atatttgttcacaagtttggttttggaaggccataattacctaaacctgcaggctaatgttttaaagatgtgttatgtcctgaaagaaaatatttgaacc |
42564502 |
T |
|
| Q |
100 |
tatttgaaactgaaatgttccaaacttatcattcttatggaataactgggcagattatataccaatacctaaagctaacaaacaaataacaatgagagaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42564503 |
tatttgaaactgaaatgttccaaacttatcattcttgtggaataactgggcagattatataccaatacctaaagctaaca----aataacaatgagagaa |
42564598 |
T |
|
| Q |
200 |
aacaatgtgaaggcaccaaaacaatcagaaagaacaaatttaacacaaccaaacatatagcaatcgtggcatgtgtaattcacaagccaatttgtgtaca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42564599 |
aacaatgtgaaggcaccaaaacaatcagaaagaacaaatttaacacaaccaaacatatagcaattgtggcatgtgtaattcacaagccaatttgtgtaca |
42564698 |
T |
|
| Q |
300 |
aggtaaaatctcaaaagtagcaaccatacatctctttcttaattgaaaacaagaagaaaaataaaaattaatagcttattctttcgatcggaagaagact |
399 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42564699 |
aggtaaaatctcgaaagtaacaaccatacatctctttcttaattgaaaacaagaagaaaaataaaaattaatagcttattctttcgatcggaagaagact |
42564798 |
T |
|
| Q |
400 |
cttggtataagttacaatctgacctctccaattatatcgatttcctttgaaaccaaactcctcaattg |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42564799 |
cttggtataagttacaatctgacctctccaattatatcgatttcctttgaaaccaagctcctcaattg |
42564866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 462 - 533
Target Start/End: Original strand, 42564340 - 42564411
Alignment:
| Q |
462 |
caattgagaacaggctcataattgattactagtatttatcagttaaagatcaataacaagtcaatatttgtt |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42564340 |
caattgagaacaggctcataattgattactagtatttatcagttgaagatcaataacaagtcaatatttgtt |
42564411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 478 - 533
Target Start/End: Original strand, 7874077 - 7874132
Alignment:
| Q |
478 |
cataattgattactagtatttatcagttaaagatcaataacaagtcaatatttgtt |
533 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
7874077 |
cataattgattactagtatttatcagttgaagatcaataacgagtcaatatttgtt |
7874132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7874124 - 7874169
Alignment:
| Q |
1 |
atatttgctcacaagtttggttttagaaggccataattacctaaac |
46 |
Q |
| |
|
||||||| |||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
7874124 |
atatttgttcacaagtttggttttggaaggtcagaattacctaaac |
7874169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1045 times since January 2019
Visitors: 1289