View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0075-INSERTION-6 (Length: 347)
Name: NF0075-INSERTION-6
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075-INSERTION-6 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| |
|
| [»] scaffold0365 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 14467646 - 14467325
Alignment:
| Q |
8 |
ttaaattatttgttgaaagctccagggtatctagttttcgcaatgatgcaacttgtgctggaacttctcctgaaagatgattgttacttacagagagttg |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14467646 |
ttaaattatttgttgaaagctccaaggtatctagtttttgcaatgatgcaacttgtgcaggaacttctcctgaaagatgattgttacttaccgagagttg |
14467547 |
T |
|
| Q |
108 |
gtacaacaaagataagctttctagctccttcggaatttttccagtaagatggtttgaagacaggtttagtcgttgtaaatttgttgctccacctagttct |
207 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
14467546 |
gatcaacaaagataagctttctagctcctttggaatttttcccgtaagatggtttgaagacaggtttagttcatgtaaatttgttgctcggcctagttct |
14467447 |
T |
|
| Q |
208 |
tgcggtatgcttcccattaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattat |
307 |
Q |
| |
|
||||||||||||| ||||||| || ||| |||||| ||||| |||||||||| |||| || |||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
14467446 |
ggcggtatgcttcctgttaaattgttattgaagattttaaggcatgtgagattcatgcattttccccaattcggtgatagatggccatacaaattattat |
14467347 |
T |
|
| Q |
308 |
cacttaattccatgtagaccaa |
329 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
14467346 |
cactcaattccatgtagtccaa |
14467325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 51 - 347
Target Start/End: Original strand, 14533057 - 14533353
Alignment:
| Q |
51 |
tgatgcaacttgtgctggaacttctcctgaaagatgattgttacttacagagagttggtacaacaaagataagctttctagctccttcggaatttttcca |
150 |
Q |
| |
|
|||||||| |||| | ||||||||||| |||||| ||||||| ||| ||||||| | |||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
14533057 |
tgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctctggaatttttcca |
14533156 |
T |
|
| Q |
151 |
gtaagatggtttgaagacaggtttagtcgttgtaaatttgttgctccacctagttcttgcggtatgcttcccattaaattattgttggagatttgaaggc |
250 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
14533157 |
gtaagatggtttgaagacagattaagttcttgtaattgtgttgctccacctagttcttgaggtatgcttccagttaaattattgttggagatttgaagac |
14533256 |
T |
|
| Q |
251 |
ttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaa |
347 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| || ||||| |
|
|
| T |
14533257 |
ttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcactcaattccatgtagtccaaatttggatacacgccaaa |
14533353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 47 - 347
Target Start/End: Complemental strand, 15016919 - 15016619
Alignment:
| Q |
47 |
gcaatgatgcaacttgtgctggaacttctcctgaaagatgattgttacttacagagagttggtacaacaaagataagctttctagctccttcggaatttt |
146 |
Q |
| |
|
|||||||| ||| |||| | ||||||||||| ||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
15016919 |
gcaatgattcaatttgttcaggaacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatttt |
15016820 |
T |
|
| Q |
147 |
tccagtaagatggtttgaagacaggtttagtcgttgtaaatttgttgctccacctagttcttgcggtatgcttcccattaaattattgttggagatttga |
246 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||| | ||||||||||| | ||||||||||||||||||| | |
|
|
| T |
15016819 |
ccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagatttta |
15016720 |
T |
|
| Q |
247 |
aggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaa |
346 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||||| |||||||||||| |||| | |||||| ||||||| |
|
|
| T |
15016719 |
aggcttgtgagattcttgcactttccccaatttggagaaatttgaccatacaaattattatcactcaattccatgtagtccaagtttggatacacaccaa |
15016620 |
T |
|
| Q |
347 |
a |
347 |
Q |
| |
|
| |
|
|
| T |
15016619 |
a |
15016619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 10 - 347
Target Start/End: Complemental strand, 15001948 - 15001611
Alignment:
| Q |
10 |
aaattatttgttgaaagctccagggtatctagttttcgcaatgatgcaacttgtgctggaacttctcctgaaagatgattgttacttacagagagttggt |
109 |
Q |
| |
|
||||||||||||| |||||||| | | ||||| |||||||||||| |||| ||||||||||||| |||||||||||||||||| ||||||| | |
|
|
| T |
15001948 |
aaattatttgttgcaagctccaatgcagttagttgatgcaatgatgcaatttgtactggaacttctccataaagatgattgttacttaacgagagtttga |
15001849 |
T |
|
| Q |
110 |
acaacaaagataagctttctagctccttcggaatttttccagtaagatggtttgaagacaggtttagtcgttgtaaatttgttgctccacctagttcttg |
209 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||||||| | |||||||||||||||| ||| || |||||||||||||||| ||||||||| | |
|
|
| T |
15001848 |
tcaacaaagataagttttctaactcctttggaatttttcgcattagatggtttgaagacaagttaagctcctgtaaatttgttgctctgcctagttctgg |
15001749 |
T |
|
| Q |
210 |
cggtatgcttcccattaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatca |
309 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || | ||| |||||||||||||||||| |
|
|
| T |
15001748 |
tggtatgcttcctgtcaaattattgttggagatttttaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatca |
15001649 |
T |
|
| Q |
310 |
cttaattccatgtagaccaaatgtggataaacaccaaa |
347 |
Q |
| |
|
|| || |||||||| |||||| |||||| |||||||| |
|
|
| T |
15001648 |
ctcaaatccatgtattccaaatttggatacacaccaaa |
15001611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 14503825 - 14503486
Alignment:
| Q |
8 |
ttaaattatttgttgaaagctccagggtatctagttttcgcaatgatgcaacttgtgctggaacttctcctgaaagatgattgttacttacagagagttg |
107 |
Q |
| |
|
||||||||||||||| |||||||| |||| |||| | |||||||||||| |||| ||||| ||||| ||||||||||||||||||| ||||||| |
|
|
| T |
14503825 |
ttaaattatttgttgcaagctccaaggtagttagtgcttgcaatgatgcaatttgtataggaacctctccagaaagatgattgttacttatcgagagttt |
14503726 |
T |
|
| Q |
108 |
gtacaacaaagataagctttctagctccttcggaatttttccagtaagatggtttgaagacaggtttagtcgttgtaaatttgttgctccacctagttct |
207 |
Q |
| |
|
| ||||||||| ||| || |||| ||||| |||||||||||||||||||||||||| |||| ||| ||| |||||||| ||| || | | |||| |
|
|
| T |
14503725 |
gatcaacaaagacaagtttcctagatcctttggaatttttccagtaagatggtttgatgacaagttaagttcatgtaaattaattgtctcagccaattct |
14503626 |
T |
|
| Q |
208 |
tgcggtatgcttcccattaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattat |
307 |
Q |
| |
|
|| ||||| |||| ||||||| || |||||||||| ||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||| | |
|
|
| T |
14503625 |
tgtggtatatttcctgttaaattgttattggagattttaaggcttgtgagactcttgcactttccccaatttggtgatagatggccatacaaattatttt |
14503526 |
T |
|
| Q |
308 |
cacttaattccatgtagaccaaatgtggataaacaccaaa |
347 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
14503525 |
cactcaattccatgtagtccaaatgtggataaacaccaaa |
14503486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 347
Target Start/End: Complemental strand, 15010804 - 15010504
Alignment:
| Q |
47 |
gcaatgatgcaacttgtgctggaacttctcctgaaagatgattgttacttacagagagttggtacaacaaagataagctttctagctccttcggaatttt |
146 |
Q |
| |
|
|||||||||||| |||| | ||||||||||| ||||||||||||||||||| ||||||| | |||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
15010804 |
gcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttt |
15010705 |
T |
|
| Q |
147 |
tccagtaagatggtttgaagacaggtttagtcgttgtaaatttgttgctccacctagttcttgcggtatgcttcccattaaattattgttggagatttga |
246 |
Q |
| |
|
||| | |||||||||||||||| ||| || |||||||||||||| | ||||||||| | ||||| ||||| |||||||||| ||||||| |
|
|
| T |
15010704 |
tcccattagatggtttgaagacaagttaagctcctgtaaatttgttgcacttcctagttctggtggtattcttcctgttaaattattaccagagattttt |
15010605 |
T |
|
| Q |
247 |
aggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaa |
346 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| || | ||| |||||||||||||||||||| |||||||||||| |||| | |||||| ||||||| |
|
|
| T |
15010604 |
aggcttgtgagaatcttgcactttccccaatttggagaaagatgaccataaaaattattatcactcaattccatgtagtccaagtttggatacacaccaa |
15010505 |
T |
|
| Q |
347 |
a |
347 |
Q |
| |
|
| |
|
|
| T |
15010504 |
a |
15010504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 347
Target Start/End: Complemental strand, 15036824 - 15036524
Alignment:
| Q |
47 |
gcaatgatgcaacttgtgctggaacttctcctgaaagatgattgttacttacagagagttggtacaacaaagataagctttctagctccttcggaatttt |
146 |
Q |
| |
|
|||||||||||| |||| | ||||||||||| ||||||||||||||||||| ||||||| | ||||||||||||| || ||||||||| |||||||| |
|
|
| T |
15036824 |
gcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaacgagagtttgaacaacaaagataaatattttagctcctttggaatttt |
15036725 |
T |
|
| Q |
147 |
tccagtaagatggtttgaagacaggtttagtcgttgtaaatttgttgctccacctagttcttgcggtatgcttcccattaaattattgttggagatttga |
246 |
Q |
| |
|
||| | |||| ||||||||||| ||| || |||||||||||||||| ||||||||| | ||||| ||||| |||||||||| |||||||| |
|
|
| T |
15036724 |
tcccattagatcgtttgaagacaagttaagctcctgtaaatttgttgctctgcctagttctggtggtattcttccagttaaattattaccggagattttt |
15036625 |
T |
|
| Q |
247 |
aggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaa |
346 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || | ||| |||||||||||||||||||| || ||||||||| |||| | |||||| ||||||| |
|
|
| T |
15036624 |
aggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcactcaagtccatgtagtccaagtttggatacacaccaa |
15036525 |
T |
|
| Q |
347 |
a |
347 |
Q |
| |
|
| |
|
|
| T |
15036524 |
a |
15036524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 47 - 347
Target Start/End: Complemental strand, 15024921 - 15024621
Alignment:
| Q |
47 |
gcaatgatgcaacttgtgctggaacttctcctgaaagatgattgttacttacagagagttggtacaacaaagataagctttctagctccttcggaatttt |
146 |
Q |
| |
|
|||||||||||| |||| | ||||||||||| ||||| ||||||||||||| ||||||| | ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
15024921 |
gcaatgatgcaatttgtacaggaacttctccagaaaggtgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatttt |
15024822 |
T |
|
| Q |
147 |
tccagtaagatggtttgaagacaggtttagtcgttgtaaatttgttgctccacctagttcttgcggtatgcttcccattaaattattgttggagatttga |
246 |
Q |
| |
|
||| || |||||||||||||||| ||| || |||||||||||||| | ||||| ||| | ||||| ||||| |||||||||| ||||||| | |
|
|
| T |
15024821 |
tcccgttagatggtttgaagacaagttaagctcctgtaaatttgttgcgctgcctagctctggtggtattcttcctgttaaattattaccagagatttta |
15024722 |
T |
|
| Q |
247 |
aggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaa |
346 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || | ||| |||||||||||||||||| | || ||||||||| ||| | |||||| ||||||| |
|
|
| T |
15024721 |
aggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcattcaagtccatgtagtacaagtttggatacacaccaa |
15024622 |
T |
|
| Q |
347 |
a |
347 |
Q |
| |
|
| |
|
|
| T |
15024621 |
a |
15024621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 47 - 347
Target Start/End: Complemental strand, 15032262 - 15031962
Alignment:
| Q |
47 |
gcaatgatgcaacttgtgctggaacttctcctgaaagatgattgttacttacagagagttggtacaacaaagataagctttctagctccttcggaatttt |
146 |
Q |
| |
|
|||||||||||| |||| | ||||||||||| ||||| ||||||||||||| ||||||| | ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
15032262 |
gcaatgatgcaatttgtacaggaacttctccagaaaggtgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatttt |
15032163 |
T |
|
| Q |
147 |
tccagtaagatggtttgaagacaggtttagtcgttgtaaatttgttgctccacctagttcttgcggtatgcttcccattaaattattgttggagatttga |
246 |
Q |
| |
|
||| || |||||||||||||||| ||| || |||||||||||||| | ||||| ||| | ||||| ||||| |||||||||| ||||||| | |
|
|
| T |
15032162 |
tcccgttagatggtttgaagacaagttaagctcctgtaaatttgttgcgctgcctagctctggtggtattcttcctgttaaattattaccagagatttta |
15032063 |
T |
|
| Q |
247 |
aggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaa |
346 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || | ||| |||||||||||||||||| | || ||||||||| ||| | |||||| ||||||| |
|
|
| T |
15032062 |
aggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcattcaagtccatgtagtacaagtttggatacacaccaa |
15031963 |
T |
|
| Q |
347 |
a |
347 |
Q |
| |
|
| |
|
|
| T |
15031962 |
a |
15031962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 67 - 347
Target Start/End: Original strand, 14522952 - 14523232
Alignment:
| Q |
67 |
ggaacttctcctgaaagatgattgttacttacagagagttggtacaacaaagataagctttctagctccttcggaatttttccagtaagatggtttgaag |
166 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| ||||||||| || ||||||| || |||| ||||| ||||||||||| |||| || ||||| | |
|
|
| T |
14522952 |
ggaacttctcccgaaagatgattattacttatcgagagttggatcagtgcagataagtttcctagatcctttggaatttttcctataagttgatttgagg |
14523051 |
T |
|
| Q |
167 |
acaggtttagtcgttgtaaatttgttgctccacctagttcttgcggtatgcttcccattaaattattgttggagatttgaaggcttgtgagattcttgca |
266 |
Q |
| |
|
||| || ||| |||||||| |||||| || | | |||| | ||||||||||| ||||||||||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
14523052 |
acaagtcaagtatatgtaaattggttgcttcagccaattctggtggtatgcttcctattaaattattattggagattttaaggcttgtcagattcttgca |
14523151 |
T |
|
| Q |
267 |
cttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaa |
347 |
Q |
| |
|
||| ||||||||||| || | || |||||||||||||||||||||||||| |||||| |||||| |||||| |||||||| |
|
|
| T |
14523152 |
cttcccccaatttggagaaagataaccataaaaattattatcacttaattctatgtagtccaaatttggatacacaccaaa |
14523232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 324
Target Start/End: Complemental strand, 15040383 - 15040283
Alignment:
| Q |
224 |
ttaaattattgttggagatttgaaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgta |
323 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||| || |||||||| ||||| ||||||||| || | |||||| |||| ||||||||||| |
|
|
| T |
15040383 |
ttaaattattgttggagattttaaggcttatgagattcttgcgttttccccaattaggtgaaatatggccaaaatatttattaccactcaattccatgta |
15040284 |
T |
|
| Q |
324 |
g |
324 |
Q |
| |
|
| |
|
|
| T |
15040283 |
g |
15040283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 51 - 347
Target Start/End: Complemental strand, 12579 - 12283
Alignment:
| Q |
51 |
tgatgcaacttgtgctggaacttctcctgaaagatgattgttacttacagagagttggtacaacaaagataagctttctagctccttcggaatttttcca |
150 |
Q |
| |
|
|||||||| |||| | ||||||||||| |||||| ||||||| ||| ||||||| | |||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
12579 |
tgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctttggaatttttcca |
12480 |
T |
|
| Q |
151 |
gtaagatggtttgaagacaggtttagtcgttgtaaatttgttgctccacctagttcttgcggtatgcttcccattaaattattgttggagatttgaaggc |
250 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
12479 |
gtaagatggtttgaagacagattaagttcttgtaattgtgttgctccacctagttcttgcggtatgcttccagttaaattattgttggagatttgaagac |
12380 |
T |
|
| Q |
251 |
ttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaa |
347 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12379 |
ttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaa |
12283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 246 - 347
Target Start/End: Complemental strand, 6096 - 5995
Alignment:
| Q |
246 |
aaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacacca |
345 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || | ||| |||||||||||||||||||| |||||||| || |||||| ||||| |||||| |
|
|
| T |
6096 |
aaggcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacacca |
5997 |
T |
|
| Q |
346 |
aa |
347 |
Q |
| |
|
|| |
|
|
| T |
5996 |
aa |
5995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 51 - 347
Target Start/End: Complemental strand, 13222 - 12926
Alignment:
| Q |
51 |
tgatgcaacttgtgctggaacttctcctgaaagatgattgttacttacagagagttggtacaacaaagataagctttctagctccttcggaatttttcca |
150 |
Q |
| |
|
|||||||| |||| | ||||||||||| |||||| ||||||| ||| ||||||| | |||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
13222 |
tgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctttggaatttttcca |
13123 |
T |
|
| Q |
151 |
gtaagatggtttgaagacaggtttagtcgttgtaaatttgttgctccacctagttcttgcggtatgcttcccattaaattattgttggagatttgaaggc |
250 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
13122 |
gtaagatggtttgaagacagattaagttcttgtaattgtgttgctccacctagttcttgcggtatgcttccagttaaattattgttggagatttgaagac |
13023 |
T |
|
| Q |
251 |
ttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaa |
347 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13022 |
ttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaa |
12926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 246 - 347
Target Start/End: Complemental strand, 6740 - 6639
Alignment:
| Q |
246 |
aaggcttgtgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacacca |
345 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || | ||| |||||||||||||||||||| |||||||| || |||||| ||||| |||||| |
|
|
| T |
6740 |
aaggcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacacca |
6641 |
T |
|
| Q |
346 |
aa |
347 |
Q |
| |
|
|| |
|
|
| T |
6640 |
aa |
6639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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