View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| ||||||||||||||||
Alignment Overview
Query: NF0075-INSERTION-9 (Length: 604)
Name: NF0075-INSERTION-9
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| |||||
| |||||
|
|
|
|
| |||||
|
|
|
|
|
| ||||||
|
|
|
|
|
|
|
|
|
| ||||||
| ||||||
|
|
|
|
|
|
|
| ||||||
| |||||
| ||||||
|
|
| ||||||
| ||||||
|
|
| ||||||
|
| ||||||
Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 125 - 604
Target Start/End: Original strand, 19154080 - 19154559
Alignment:
| Q | 125 | aaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttctaaacct | 224 | Q |
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||
| T | 19154080 | aaagaaataactacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctcttctaaacct | 19154179 | T |
 | ||||
| Q | 225 | ttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccat | 324 | Q |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 19154180 | ttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccat | 19154279 | T |
| ||||
| Q | 325 | caagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaagaataaagaccattttctgatta | 424 | Q |
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 19154280 | caagaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaagaataaagaccattttctgatta | 19154379 | T |
| ||||
| Q | 425 | atggataattaccactatgtgcaattagtgggtaattaacacttatttatttaattcaaaataaataacttaattagggaaaatccaacattctcccact | 524 | Q |
| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 19154380 | atggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaattagggaaaatccaacattctcccact | 19154479 | T |
| ||||
| Q | 525 | tggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacaggtcctctttaattgagta | 604 | Q |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||
| T | 19154480 | tggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcaaagcgacaggtcctctttaattgagta | 19154559 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 125 - 515
Target Start/End: Original strand, 19159985 - 19160375
Alignment:
| Q | 125 | aaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttctaaacct | 224 | Q |
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||
| T | 19159985 | aaagaaataactacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctcttctaaacct | 19160084 | T |
| ||||
| Q | 225 | ttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccat | 324 | Q |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 19160085 | ttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttaggaaaccaaaacaaatgaactgcactcctttatataacttctgccat | 19160184 | T |
| ||||
| Q | 325 | caagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaagaataaagaccattttctgatta | 424 | Q |
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||
| T | 19160185 | caagaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttattaaatttaagggaaagaataaagactattttctgatta | 19160284 | T |
| ||||
| Q | 425 | atggataattaccactatgtgcaattagtgggtaattaacacttatttatttaattcaaaataaataacttaattagggaaaatccaacat | 515 | Q |
| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||
| T | 19160285 | atggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaattagggaaaatccaacat | 19160375 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 97 - 432
Target Start/End: Original strand, 4253070 - 4253405
Alignment:
| Q | 97 | ttatgtgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgc | 196 | Q |
| |||| |||||||||||||| | |||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| | ||| ||| | ||||
| T | 4253070 | ttatatgtaagttatttcataaagaacaaaagaaataactacttaaacaacggaaatttaaattaaaggatcaaggcatacctccagccactactcctgc | 4253169 | T |
| ||||
| Q | 197 | ttgaagaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaa | 296 | Q |
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 4253170 | ttgaagaagttgaggctcttctaaaccttccacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaa | 4253269 | T |
| ||||
| Q | 297 | ctgcactcctttatataacttctgccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaag | 396 | Q |
| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
| T | 4253270 | ctacactcctttatataacttctgccatcaagaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatggacagttactaaatttaag | 4253369 | T |
| ||||
| Q | 397 | ggaaagaataaagaccattttctgattaatggataa | 432 | Q |
| |||||||||||||| ||||||||||||||||||||| | ||||
| T | 4253370 | ggaaagaataaagaacattttctgattaatggataa | 4253405 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 102 - 452
Target Start/End: Complemental strand, 11576637 - 11576289
Alignment:
| Q | 102 | tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa | 201 | Q |
| ||||| |||||||| | ||||||||| |||||||| |||||||||||||||||||||||||||||| ||| |||||||| |||||||||| |||||||| | ||||
| T | 11576637 | tgtaaattatttcataaagaacaaaataaataactacttaaacagcggaaacttaaattaaaggattaagacatacctc--gccattgctcctgcttgaa | 11576540 | T |
| ||||
| Q | 202 | gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca | 301 | Q |
| |||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||| ||||||||| || | ||||
| T | 11576539 | gaagttgaggctcttctaaagctttcacaatctcactttgatggtgcaagtctcctgaatagagatgttaggcttagagaaccaaaataaatgaactaca | 11576440 | T |
| ||||
| Q | 302 | ctcctttatataacttctgccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaa | 401 | Q |
| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | ||||
| T | 11576439 | ctcctttatataacttctgccatcaagaagttactggacgtgcaaaacaaaactgctcctccactcactcataatgggcagttattaaatttaacagaaa | 11576340 | T |
| ||||
| Q | 402 | gaataaagaccattttctgattaatggataattaccactatgtgcaattag | 452 | Q |
| ||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||
| T | 11576339 | gaataaagaccattttctgattaatggataactaccactatgtgcacttag | 11576289 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 449 - 507
Target Start/End: Complemental strand, 11575618 - 11575562
Alignment:
| Q | 449 | ttagtgggtaattaacacttatttatttaattcaaaataaataacttaattagggaaaa | 507 | Q |
| |||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||||| | ||||
| T | 11575618 | ttagtgggtagttaccacttatttatttaaat--aaataaataacttaattagggaaaa | 11575562 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 102 - 604
Target Start/End: Complemental strand, 18481109 - 18480607
Alignment:
| Q | 102 | tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa | 201 | Q |
| |||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| | ||||
| T | 18481109 | tgtaagttatttcataaagaacaaaagaaataactacttaaacagcggaaacttaaattaaaggattaaggcatacctccaaccattgctcctgcttgaa | 18481010 | T |
| ||||
| Q | 202 | gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca | 301 | Q |
| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| | ||||
| T | 18481009 | gaagttgaggcttttctaaaccttccacaatctcactttgatggtgtaagtcttctgaatactgatgttaggcttaggcaaccaaaacaaatgaacggca | 18480910 | T |
| ||||
| Q | 302 | ctcctttatataacttctgccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaa | 401 | Q |
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 18480909 | ctcctttatataacttctgccatcaagaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaa | 18480810 | T |
| ||||
| Q | 402 | gaataaagaccattttctgattaatggataattaccactatgtgcaattagtgggtaattaacacttatttatttaattcaaaataaataacttaattag | 501 | Q |
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| | ||||
| T | 18480809 | gaataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaattag | 18480710 | T |
| ||||
| Q | 502 | ggaaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacaggtcctctttaattga | 601 | Q |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 18480709 | ggaaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacaggtcctctttaattga | 18480610 | T |
| ||||
| Q | 602 | gta | 604 | Q |
| ||| | ||||
| T | 18480609 | gta | 18480607 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 103 - 604
Target Start/End: Complemental strand, 32752881 - 32752380
Alignment:
| Q | 103 | gtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaag | 202 | Q |
| ||||||||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||| | ||||
| T | 32752881 | gtaagttatttcataaagaacaaa-gaaataactgtttaaacagcggaaacttaaattaaaggattaaggcataccttcagtcattgctcctgcttgaag | 32752783 | T |
| ||||
| Q | 203 | aagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcac | 302 | Q |
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||
| T | 32752782 | aagttgaggctcttctaaaccttttacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagagaaccaaaacaaatgaactgcaa | 32752683 | T |
| ||||
| Q | 303 | tcctttatataacttctgccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaag | 402 | Q |
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||
| T | 32752682 | tcctttatataacttctgccatcaagaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatgggctattactaaatttaagggaaag | 32752583 | T |
| ||||
| Q | 403 | aataaagaccattttctgattaatggataattaccactatgtgcaattagtgggtaattaacacttatttatttaatt-caaaataaataacttaattag | 501 | Q |
| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||| | ||||
| T | 32752582 | aataaagaccattttctaattaatggataattaccactatgtgcaccaagtgggtaattaccacttatttatttaattaaaaaataaataacttaattag | 32752483 | T |
| ||||
| Q | 502 | gg-aaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacaggtcctctttaattg | 600 | Q |
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||
| T | 32752482 | ggaaaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaagc-aaaacacacggatcatagcgacaggtcctctttaattg | 32752384 | T |
| ||||
| Q | 601 | agta | 604 | Q |
| |||| | ||||
| T | 32752383 | agta | 32752380 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 102 - 514
Target Start/End: Complemental strand, 18475167 - 18474755
Alignment:
| Q | 102 | tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa | 201 | Q |
| |||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||
| T | 18475167 | tgtaagttatttcataaagaacaaaagaaataactacttaaacagcggaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgcttgaa | 18475068 | T |
| ||||
| Q | 202 | gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca | 301 | Q |
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 18475067 | gaagttgaggctcttctaaaccttccacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca | 18474968 | T |
| ||||
| Q | 302 | ctcctttatataacttctgccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaa | 401 | Q |
| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 18474967 | ctcctttatataacttctgccatcaagaagttactgaacgtgcaaaacaaaattgctcctccactcactcataatgggcagttactaaatttaagggaaa | 18474868 | T |
| ||||
| Q | 402 | gaataaagaccattttctgattaatggataattaccactatgtgcaattagtgggtaattaacacttatttatttaattcaaaataaataacttaattag | 501 | Q |
| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| | ||||
| T | 18474867 | gaataaagaccattttctaattaatggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaattag | 18474768 | T |
| ||||
| Q | 502 | ggaaaatccaaca | 514 | Q |
| ||||||||||||| | ||||
| T | 18474767 | ggaaaatccaaca | 18474755 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 102 - 514
Target Start/End: Complemental strand, 21698100 - 21697693
Alignment:
| Q | 102 | tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa | 201 | Q |
| |||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||||
| T | 21698100 | tgtaagttatttcataaagaacaaaagaaataactgcttaaacagcggaaacttaaattaaaggatcaaggcataccttcagccattgctcctgcttgaa | 21698001 | T |
| ||||
| Q | 202 | gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca | 301 | Q |
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
| T | 21698000 | gaagttgaggctcttctaaaccttccacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaattaaaacaaatgaactgca | 21697901 | T |
| ||||
| Q | 302 | ctcctttatataacttctgccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaa | 401 | Q |
| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || | ||||
| T | 21697900 | ctcctttatataacttctgccatcaagaa----ctgaacgtgcaaaataaaactgctcctccactcactcataatggacagttactaaatttaaggg-aa | 21697806 | T |
| ||||
| Q | 402 | gaataaagaccattttctgattaatggataattaccactatgtgcaattagtgggtaattaacacttatttatttaattcaaaataaataacttaattag | 501 | Q |
| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||||||| ||| | ||||
| T | 21697805 | gaataaagaccattttctgattaatggataattaccactatgtgcacttaatgggtaattaccacttatttatttaattaaaaataaataacttaaatag | 21697706 | T |
| ||||
| Q | 502 | ggaaaatccaaca | 514 | Q |
| ||||||||||||| | ||||
| T | 21697705 | ggaaaatccaaca | 21697693 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 5477829 - 5477922
Alignment:
| Q | 8 | tctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcgtatattttagcttttatg | 101 | Q |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
| T | 5477829 | tctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcctatattttagcttttatg | 5477922 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 26416835 - 26416915
Alignment:
| Q | 138 | cttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttct | 218 | Q |
| |||||||| |||||||||||||||||||||||||||||||||||| |||||| || || ||||||| | |||||||||||| | ||||
| T | 26416835 | cttaaacaacggaaacttaaattaaaggatcaaggcatacctccaaccattgttcctgtttgaagatggtgaggctcttct | 26416915 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 102 - 512
Target Start/End: Complemental strand, 7459098 - 7458688
Alignment:
| Q | 102 | tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa | 201 | Q |
| |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | ||||
| T | 7459098 | tgtaagttatttcatatagaacaaaagaaataactacttaaacagcggaaatttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaa | 7458999 | T |
| ||||
| Q | 202 | gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca | 301 | Q |
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 7458998 | gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcatctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca | 7458899 | T |
| ||||
| Q | 302 | ctcctttatataacttctgccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaa | 401 | Q |
| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 7458898 | ctcctttatataacttctgccatcaaaaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaa | 7458799 | T |
| ||||
| Q | 402 | gaataaagaccattttctgattaatggataattaccactatgtgcaattagtgggtaattaacacttatttatttaattcaaaataaataacttaattag | 501 | Q |
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| | ||||
| T | 7458798 | gaataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaattag | 7458699 | T |
| ||||
| Q | 502 | ggaaaatccaa | 512 | Q |
| ||||||||||| | ||||
| T | 7458698 | ggaaaatccaa | 7458688 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 102 - 512
Target Start/End: Complemental strand, 7450956 - 7450546
Alignment:
| Q | 102 | tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa | 201 | Q |
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||
| T | 7450956 | tgtaagttatttcatatagaacaaaagaaataactacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaa | 7450857 | T |
| ||||
| Q | 202 | gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca | 301 | Q |
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 7450856 | gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcatctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca | 7450757 | T |
| ||||
| Q | 302 | ctcctttatataacttctgccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaa | 401 | Q |
| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 7450756 | ctcctttatataacttctgctatcaagaagttactgaacgtgcaaaacaaaactgctcatccactcactcataatgggcagttactaaatttaagggaaa | 7450657 | T |
| ||||
| Q | 402 | gaataaagaccattttctgattaatggataattaccactatgtgcaattagtgggtaattaacacttatttatttaattcaaaataaataacttaattag | 501 | Q |
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| | ||||
| T | 7450656 | aaataaagaccattttctgattaatggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaattag | 7450557 | T |
| ||||
| Q | 502 | ggaaaatccaa | 512 | Q |
| ||||||||||| | ||||
| T | 7450556 | ggaaaatccaa | 7450546 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 102 - 507
Target Start/End: Complemental strand, 7649610 - 7649206
Alignment:
| Q | 102 | tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa | 201 | Q |
| |||||||||||||| | |||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| | |||||| | ||||
| T | 7649610 | tgtaagttatttcataaagaacaaac-aaataactacttaaacaacggaaacttaaattaaacgatcaaggcatacctccaaccattgctcctacttgaa | 7649512 | T |
| ||||
| Q | 202 | gaa--gttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactg | 299 | Q |
| ||| ||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||
| T | 7649511 | gaaaagttgaggctcttctaaaccttccacaatttcactttgatggtgcaagtcttctgaatagagatgttaggtttagggaaccaaaacaaatgaactg | 7649412 | T |
| ||||
| Q | 300 | cactcctttatataacttctgccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaaggga | 399 | Q |
| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | ||||
| T | 7649411 | cactcctttatataacttctg-catcaagaagttactgaacgtgcaaaacaaaactgctcctccactcactcataatgagcagttactaaatttaagaga | 7649313 | T |
| ||||
| Q | 400 | aagaataaagaccattttctgattaatggataattaccactatgtgcaattagtgggtaattaacacttatttatttaattcaaaataaataacttaatt | 499 | Q |
| |||||||||||||||||||| |||||| |||||||| ||||||||||| |||| | |||||| ||||||||||||||||| |||||||||||| ||||| | ||||
| T | 7649312 | aagaataaagaccattttctaattaatagataatta-cactatgtgcacttagctgataattaccacttatttatttaattaaaaataaataacctaatt | 7649214 | T |
| ||||
| Q | 500 | agggaaaa | 507 | Q |
| |||||||| | ||||
| T | 7649213 | agggaaaa | 7649206 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 102 - 333
Target Start/End: Complemental strand, 36840010 - 36839781
Alignment:
| Q | 102 | tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa | 201 | Q |
| |||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||||
| T | 36840010 | tgtaagttatttcataaataacaaaagaaataactacttaaacagcggaaacttaaatta--ggatcaaggcatacctccagccattgctcctgcttgaa | 36839913 | T |
| ||||
| Q | 202 | gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca | 301 | Q |
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||
| T | 36839912 | gaagttgaggctcttctaaaccttccacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaactgttgaattgca | 36839813 | T |
| ||||
| Q | 302 | ctcctttatataacttctgccatcaagaagtt | 333 | Q |
| |||||||||||||||||||||||||||||| | ||||
| T | 36839812 | agcctttatataacttctgccatcaagaagtt | 36839781 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 102 - 330
Target Start/End: Complemental strand, 36835983 - 36835757
Alignment:
| Q | 102 | tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa | 201 | Q |
| |||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||||
| T | 36835983 | tgtaagttatttcataaataacaaaagaaataactacttaaacagcggaaacttaaatta--ggatcaaggcatacctccagccattgctcctgcttgaa | 36835886 | T |
| ||||
| Q | 202 | gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca | 301 | Q |
| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||
| T | 36835885 | gaagttgagtctcttctaaaccttccacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaattgttgaattgca | 36835786 | T |
| ||||
| Q | 302 | ctcctttatataacttctgccatcaagaa | 330 | Q |
| ||||||||||||||||||||||||||| | ||||
| T | 36835785 | agcctttatataacttctgccatcaagaa | 36835757 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 50808731 - 50808640
Alignment:
| Q | 8 | tctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcgtatattttagctttta | 99 | Q |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||
| T | 50808731 | tctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttaatatttggtttattctttcgtatattttagctttta | 50808640 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 50867131 - 50867222
Alignment:
| Q | 8 | tctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcgtatattttagctttta | 99 | Q |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||
| T | 50867131 | tctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttaatatttggtttattctttcgtatattttagctttta | 50867222 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 504 - 583
Target Start/End: Complemental strand, 36839627 - 36839549
Alignment:
| Q | 504 | aaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcga | 583 | Q |
| ||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||| | ||||
| T | 36839627 | aaaatccaacattcttccacttggtcgacatattctttcactcatgataataagaaac-aaaacacatggatcatagcga | 36839549 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 36835712 - 36835649
Alignment:
| Q | 376 | tgggcagttactaaatttaagggaaagaat-aaagaccattttctgattaatggataattacca | 438 | Q |
| ||||||||||||| | || ||||||||||| |||||||| |||||| ||||||| ||||||||| | ||||
| T | 36835712 | tgggcagttactataattgagggaaagaataaaagaccactttctgcttaatgggtaattacca | 36835649 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 36839739 - 36839676
Alignment:
| Q | 376 | tgggcagttactaaatttaagggaaagaat-aaagaccattttctgattaatggataattacca | 438 | Q |
| ||||||||||||| | || ||||||||||| |||||||| |||||| ||||||| ||||||||| | ||||
| T | 36839739 | tgggcagttactataattgagggaaagaataaaagaccactttctgcttaatgggtaattacca | 36839676 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 103 - 487
Target Start/End: Complemental strand, 20125 - 19742
Alignment:
| Q | 103 | gtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaag | 202 | Q |
| ||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |||||||||| | ||||||| | ||||
| T | 20125 | gtaagttatttcataaagaacaaa-gaaataactacttaaacagcggaaacttaaattaaaggattaaggcataccttccgccattgctcctacttgaag | 20027 | T |
| ||||
| Q | 203 | aagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcac | 302 | Q |
| |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||
| T | 20026 | aagttgaggctcttctaaacattccacaatctcactttgatggtgcaagtcttctgaatagagatgttaggcttagcgaaccaaaacaaatgaactacac | 19927 | T |
| ||||
| Q | 303 | tcctttatataacttctgccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaag | 402 | Q |
| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||
| T | 19926 | tcctttacataacttctgccatcaagaagttagtgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagagaaag | 19827 | T |
| ||||
| Q | 403 | aataaagaccattttctgattaatggataattaccactatgtgcaattagtgggtaattaacacttatttatttaattcaaaata | 487 | Q |
| ||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| ||||||||| |||||| | ||||
| T | 19826 | aataaagactattttctgattaatggataattaccaccatgtgcacttagtgggtaattaccacttatatatttaattaaaaata | 19742 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 102 - 419
Target Start/End: Complemental strand, 48638982 - 48638665
Alignment:
| Q | 102 | tgtaagttatttcacatagaacaaaagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaa | 201 | Q |
| |||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||
| T | 48638982 | tgtaagttatttcataaagaacaaaagaaataactacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaa | 48638883 | T |
| ||||
| Q | 202 | gaagttgaggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgca | 301 | Q |
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | ||||
| T | 48638882 | gaagttgaggctcttctaaaccttccacaatctcactttgatggtgtaagtcttttgaatagagatgttaggcttagggaaccaaaacaaatgaactcca | 48638783 | T |
| ||||
| Q | 302 | ctcctttatataacttctgccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaa | 401 | Q |
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||
| T | 48638782 | ctcctttatataacttctgccatcaagaagttactgaacgtgcaaaacaaaactgctcctccactcaatcataatgggcagttactaaatttaagggaaa | 48638683 | T |
| ||||
| Q | 402 | gaataaagaccattttct | 419 | Q |
| |||||||||||||||||| | ||||
| T | 48638682 | gaataaagaccattttct | 48638665 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 403 - 508
Target Start/End: Complemental strand, 48638528 - 48638423
Alignment:
| Q | 403 | aataaagaccattttctgattaatggataattaccactatgtgcaattagtgggtaattaacacttatttatttaattcaaaataaataacttaattagg | 502 | Q |
| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | ||||
| T | 48638528 | aataaagaccattttctaattaatggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaattagg | 48638429 | T |
| ||||
| Q | 503 | gaaaat | 508 | Q |
| |||||| | ||||
| T | 48638428 | gaaaat | 48638423 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 212 - 495
Target Start/End: Complemental strand, 23691738 - 23691459
Alignment:
| Q | 212 | ctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcactcctttata | 311 | Q |
| |||||||||| ||| ||||||||||||||||||||||||| || | ||||| |||||| |||||| ||| ||||| ||||| |||||||| ||||| | ||||
| T | 23691738 | ctcttctaaatcttctacaatctcactttgatggtgtaagttttattcatagaaatgttaagcttagagaatcaaaaacaatgagctgcactcttttatc | 23691639 | T |
| ||||
| Q | 312 | taacttctgccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaagaataaagac | 411 | Q |
| ||||| ||||| |||||||| | | | | || | ||||||||||||||||||||| | |||| |||||||||||| |||| ||| ||||||||| | ||||
| T | 23691638 | -aacttatgccaacaagaagtcaccgtaagcataacaaaaaactgctcctccactcacttaatatggatagttactaaatt-aaggaaaaaaataaagac | 23691541 | T |
| ||||
| Q | 412 | cattttctgattaatggataattaccactatgtgcaattagtgggtaattaacacttatttatttaattcaaaataaataactt | 495 | Q |
| ||||||||||||||| | ||| |||| ||||||||| || |||||||||| ||||||||||||||| | ||||||||||||| | ||||
| T | 23691540 | cattttctgattaataggtaactacccctatgtgcatctaatgggtaattatcacttatttatttaaat--aaataaataactt | 23691459 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 266 - 425
Target Start/End: Complemental strand, 23688895 - 23688734
Alignment:
| Q | 266 | atgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccatcaagaagttgctgaacgtgcaaaacaaaact--gctcctcc | 363 | Q |
| ||||||| ||||| |||||||| |||||| ||||| ||||||||||||||||| ||| |||||||| | | ||||||||||||||| | || ||| | ||||
| T | 23688895 | atgttagatttaggaaaccaaaaacaatgaattgcacacctttatataacttctgtcattaagaagttacggtacgtgcaaaacaaaaaatggttcttcc | 23688796 | T |
| ||||
| Q | 364 | actcactcataatgggcagttactaaatttaagggaaagaataaagaccattttctgattaa | 425 | Q |
| ||||| |||| |||| || ||| |||||||||||||||||||||||||| |||| ||||||| | ||||
| T | 23688795 | actcattcattatggacaattattaaatttaagggaaagaataaagacctttttttgattaa | 23688734 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 504 - 593
Target Start/End: Original strand, 51978327 - 51978415
Alignment:
| Q | 504 | aaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacaggtcctct | 593 | Q |
| |||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||||||||| | ||||||| | ||||
| T | 51978327 | aaaatctaacattctcccacttggtcgacatattctttcactcataataataagaaac-aaaacacatggatcatagcgataagtcctct | 51978415 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 51983531 - 51983628
Alignment:
| Q | 126 | aagaaataacttcttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttctaaacctt | 225 | Q |
| ||||||||| | ||| |||| |||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||
| T | 51983531 | aagaaataattatttatacagtggaaacttaaatta--ggatcaaggcatacctcctgccattgcttctgcttgaagaagttgaggctcttctaaacctt | 51983628 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 51977680 - 51977757
Alignment:
| Q | 163 | aggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttctaaacctttcacaatctcacttt | 240 | Q |
| ||||||||| |||||||||||| ||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||| | ||||
| T | 51977680 | aggatcaagacatacctccagctattgctcctgcttaaagaagttgaggttcttctaaaccttccacaatctcacttt | 51977757 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 51983631 - 51983701
Alignment:
| Q | 263 | gagatgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccatcaagaagtt | 333 | Q |
| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||| | ||||
| T | 51983631 | gagatgttaggcttagggaaccaaaactgatgaattgcaagcctttatataacttctgtcatcaagaagtt | 51983701 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 140 - 515
Target Start/End: Complemental strand, 42324 - 41952
Alignment:
| Q | 140 | taaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttctaaacctttcacaatctcactt | 239 | Q |
| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| | ||||
| T | 42324 | taaacagtggaaacttaaatta--ggatcaaggcatatctccagccattgctcctgcttgaagtagttgaggctcttctaaaccttccacaatctcactt | 42227 | T |
| ||||
| Q | 240 | tgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccatcaagaagttgctgaa | 339 | Q |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| | ||||
| T | 42226 | tgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaagtgcactcctttatataacttatgccatcaagaagttactgaa | 42127 | T |
| ||||
| Q | 340 | cgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaagaataaagaccattttctgattaatggataattaccac | 439 | Q |
| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||
| T | 42126 | agtgcaaaataaaactgctcctccactaactcataacgggcagttactaaatttaagggaaagaataaagacaattttctgattaatggataattaccac | 42027 | T |
| ||||
| Q | 440 | tatgtgcaattagtgggtaattaacacttatttatttaattcaaaataaataacttaattaggg-aaaatccaacat | 515 | Q |
| ||||||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||| | ||||
| T | 42026 | tatgtgctcttagtgggtaattaccacttatttatttaaat--aaataaataacttaattagggaaaaatccaacat | 41952 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0763 (Bit Score: 153; Significance: 9e-81; HSPs: 1)
Name: scaffold0763
Description:
Target: scaffold0763; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 421 - 604
Target Start/End: Complemental strand, 2371 - 2190
Alignment:
| Q | 421 | attaatggataattaccactatgtgcaattagtgggtaattaacacttatttatttaattcaaaataaataacttaattagggaaaatccaacattctcc | 520 | Q |
| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | ||||
| T | 2371 | attaatggataattaccactatgtgcacttagtgggtaattaccacttatttatttaattaaaaataaataacttaattagggaaaatccaacat--tcc | 2274 | T |
| ||||
| Q | 521 | cacttggtcgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacaggtcctctttaattgagta | 604 | Q |
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
| T | 2273 | cacttggttgacatattctttcacttacaataataagaaacaaaaacacacggatcatagcgacagatcctctttaattgagta | 2190 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 19053839 - 19053932
Alignment:
| Q | 8 | tctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcgtatattttagcttttatg | 101 | Q |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 19053839 | tctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcgtatattttagcttttatg | 19053932 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 138 - 333
Target Start/End: Complemental strand, 9937432 - 9937237
Alignment:
| Q | 138 | cttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcttgcttgaagaagttgaggctcttctaaacctttcacaatctcac | 237 | Q |
| |||||||||| ||||||||| |||||||||||| | |||||| || || ||||||||| ||||||| |||||| |||||||||||||| ||||||||||| | ||||
| T | 9937432 | cttaaacagcagaaacttaagttaaaggatcaaagtatacctacaaccgttgctcttgtttgaagatgttgagactcttctaaaccttccacaatctcac | 9937333 | T |
| ||||
| Q | 238 | tttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccatcaagaagtt | 333 | Q |
| ||||||| |||||| ||||||||| | ||||||| |||||||||||||| | ||||| | || ||||||||||| ||||| | |||||||||| | ||||
| T | 9937332 | tttgatgatgtaagatttctgaataaaaatgttagacttagggaaccaaagctgatgaattacaagcctttatataatttctgtcgtcaagaagtt | 9937237 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 504 - 565
Target Start/End: Complemental strand, 9937056 - 9936995
Alignment:
| Q | 504 | aaaatccaacattctcccacttggtcgacatattctttcacttacaataataagaaacaaaa | 565 | Q |
| |||||| |||||||||| | |||||||||||||||||||||| ||||||||||||||||||| | ||||
| T | 9937056 | aaaatctaacattctcctatttggtcgacatattctttcactcacaataataagaaacaaaa | 9936995 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 173 - 440
Target Start/End: Original strand, 28865101 - 28865364
Alignment:
| Q | 173 | catacctccagccattgctcttgcttgaagaagttgagg-ctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgtta | 271 | Q |
| ||||||||| ||||||| | ||||||||||| ||| | ||||| |||||||| |||||||||| ||||| ||||| ||| ||||| |||||||||||| | ||||
| T | 28865101 | catacctcccgccattgtttttgcttgaagatgtttttgactcttataaaccttccacaatctcattttgacggtgtcagttttctgtatagagatgtta | 28865200 | T |
| ||||
| Q | 272 | ggcttagggaaccaaaacaaatgaactgcactcctttatataacttctgccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactc | 371 | Q |
| || |||||| |||||||||| |||||| |||| ||||||||||| ||| | || || || || |||||||||| |||||| ||||||||||||||| | ||||
| T | 28865201 | ggtttaggggaccaaaacaa-tgaactacacttctttatataacatctactataaaaaaattaaaacacgtgcaaaataaaactactcctccactcactc | 28865299 | T |
| ||||
| Q | 372 | ataatgggcagttactaaatttaagggaaagaataaagaccattttctgattaatggataattaccact | 440 | Q |
| || |||| |||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||| | ||||
| T | 28865300 | attatgg----ttactaaatttaagagaaagaataaagaccattttctaatgaatgggtaattaccact | 28865364 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 2685485 - 2685392
Alignment:
| Q | 8 | tctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcgtatattttagcttttatg | 101 | Q |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
| T | 2685485 | tctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcctatattttagcttttatg | 2685392 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 35159205 - 35159299
Alignment:
| Q | 209 | aggctcttctaaacctttcacaatctcactttgatggtgtaagtcttctgaatagagatgttaggcttagggaaccaaaacaaatgaactgcact | 303 | Q |
| |||||||| |||||||| ||||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||| ||||| |||||| | ||||
| T | 35159205 | aggctcttttaaaccttccacaatctcactttgatagtgtaaatcttttgaatagagttgttaggcttagggaaccaaaactcatgaattgcact | 35159299 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 35158775 - 35158828
Alignment:
| Q | 138 | cttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgct | 191 | Q |
| |||||||| |||||||||||||||| || ||||||||||||| ||||||||| | ||||
| T | 35158775 | cttaaacaagggaaacttaaattaaaagacaaaggcatacctcccgccattgct | 35158828 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 45008909 - 45008816
Alignment:
| Q | 8 | tctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcgtatattttagcttttatg | 101 | Q |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
| T | 45008909 | tctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcctatattttagcttttatg | 45008816 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 1995419 - 1995391
Alignment:
| Q | 60 | tttcatatttggtttattctttcgtatat | 88 | Q |
| ||||||||||||||||||||||||||||| | ||||
| T | 1995419 | tttcatatttggtttattctttcgtatat | 1995391 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 321 - 410
Target Start/End: Complemental strand, 14219 - 14130
Alignment:
| Q | 321 | ccatcaagaagttgctgaacgtgcaaaacaaaactgctcctccactcactcataatgggcagttactaaatttaagggaaagaataaaga | 410 | Q |
| ||||||||||||| ||| ||||||| |||||| || |||||||||||| |||| || ||||||||||||||||||| |||||||| | ||||
| T | 14219 | ccatcaagaagttaacgaagatgcaaaataaaactacttatccactcactcagcatggacatttactaaatttaagggaaataataaaga | 14130 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3451 times since January 2019Visitors: 7354