View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0075_high_1 (Length: 507)
Name: NF0075_high_1
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0075_high_1
Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 42 - 501
Target Start/End: Complemental strand, 19107051 - 19106589
Alignment:
Q
42
caattctcatgtttaagagagaga--taggtgataccaaataaataccaattccaaatccagtaaatgtctttaagaacataaaatgtgttctctttaag
139
Q
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
T
19107051
caattctcatgtttaagagagagagataggtgataccaaataaataccaattccatatccagtaaatatctttaagaacataaaatgtgttctctttaag
19106952
T
Q
140
aacgtaatagaataaa-ttcactttctatcagcaatgttaacagtactgttaatagtgatgtttaatacaatcacaaacccctaattgcaagccatttct
238
Q
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||
T
19106951
aacgtaatagaataaaattcactttctatcagcaatgttaacagtactattaatagtgatgtttaatgcaatcacaaacccttaattgcaagccatttct
19106852
T
Q
239
ttgctttccagttcaaccttacgaatatgttcgtccatgttcaccacagcctcaccaccatcacctttcatccgcttcagtggaggattcaaatcaacct
338
Q
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
T
19106851
ttgctttccagttcagccttacgaatatgttcgtccatgttcaccacagcctcgccaccatcacctttcatccgcttcagtggaggattcaaatcaacct
19106752
T
Q
339
cgttaacttctttcaagacttcttcacttgaatcacagggtttcgaaacttttgtcttctcatccaacttggtattttcactgcctttagcacttgattc
438
Q
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
19106751
cgttaacttctttcaagacttcttcacttgaatcgcagggtttcgaaacttttgtcttctcatccaacttggtattttcactgcctttagcacttgattc
19106652
T
Q
439
ttcaaaactatcctccatctaatcagcctgtagctggagtgattctatgacacccatcatttc
501
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
19106651
ttcaaaactatcctccatctaatcagcctgtagctggagtgattctatgacacccatcatttc
19106589
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 262 - 501
Target Start/End: Complemental strand, 43197035 - 43196796
Alignment:
Q
262
aatatgttcgtccatgttcaccacagcctcaccaccatcacctttcatccgcttcagtggaggattcaaatcaacctcgttaacttctttcaagacttct
361
Q
||||||||| ||| ||||| ||||||||| |||||| ||||||| |||||||| |||||||||||| |||| || ||||| ||| |||||||||| |
T
43197035
aatatgttcctccgtgttcgccacagccttgccaccagtacctttcctccgcttctgtggaggattcagatcattcttgttaatttccttcaagactttt
43196936
T
Q
362
tcacttgaatcacagggtttcgaaacttttgtcttctcatccaacttggtattttcactgcctttagcacttgattcttcaaaactatcctccatctaat
461
Q
||||||||||||||||| || ||||| | |||| ||||||| |||| ||||||| | ||| |||||||||||||| |||| |||||||||| |
T
43196935
tcacttgaatcacagggctttgaaacctccgtctcctcatccggcttgagattttcatcactttttacacttgattcttcagaactctcctccatctgtt
43196836
T
Q
462
cagcctgtagctggagtgattctatgacacccatcatttc
501
Q
|||||||| |||||||||||||||||||||||||||||||
T
43196835
cagcctgttgctggagtgattctatgacacccatcatttc
43196796
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 53673338 - 53673287
Alignment:
Q
278
ttcaccacagcctcaccaccatcacctttcatccgcttcagtggaggattca
329
Q
|||| |||||||| |||||| |||||||| |||||||||||||||||||||
T
53673338
ttcatcacagccttgccaccagcacctttcgtccgcttcagtggaggattca
53673287
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 43190621 - 43190697
Alignment:
Q
297
catcacctttcatccgcttcagtggaggattcaaatcaacctcgttaacttctttcaagacttcttcacttgaatca
373
Q
||||||||||| || |||| |||||||||||| |||| ||||||||| ||| | || ||||| |||||| ||||||
T
43190621
catcacctttcctcttcttctgtggaggattcacatcatcctcgttaatttcctccacgactttttcactcgaatca
43190697
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 501
Target Start/End: Original strand, 43190797 - 43190837
Alignment:
Q
461
tcagcctgtagctggagtgattctatgacacccatcatttc
501
Q
||||||||| ||||||||| |||||| ||||||||||||||
T
43190797
tcagcctgtcgctggagtgtttctatcacacccatcatttc
43190837
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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