View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075_high_3 (Length: 438)
Name: NF0075_high_3
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 29 - 428
Target Start/End: Original strand, 1429793 - 1430192
Alignment:
| Q |
29 |
aatatgtatatacacctctctttcctaaatgtatcaaactttctttcctatttatttatattataaatgtttataatgtgtctacatctttcaattcact |
128 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1429793 |
aatatgtatatacacctctctttccaatatgtatcaaactttctttcctatttatttatattataaatgtttataatgtgtctacatctttcaattcact |
1429892 |
T |
|
| Q |
129 |
ttctagttttatgaatttaaaatatgcttgaaaacaaaagaatgtatctagtaatttaaaatgagattcatatttaggtacacannnnnnnccttcaaaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1429893 |
ttctagttttatgaatttaaaatatgcttgaaaacaaaagaatgtatctagtaatttaaaatgagattcatatttaggtacacatttttttccttcaaaa |
1429992 |
T |
|
| Q |
229 |
aagtgcttatatacagagagacaaaatagtatcaagcttcacattctatgttttatttagaatttttaagtttaaatccacagttcaacaaaaatcagtc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1429993 |
aagtgcttatatacagagagacaaaatagtatcaagcttcacattctatgttttatttagaatttttaagtttaaatccacagttcaacaaaaatcagtc |
1430092 |
T |
|
| Q |
329 |
taaacacaatatttggaaacacttcacttattgatattatttataaataaatttacaaataggaatacatctacattgaaattttctctcagcctctgtg |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1430093 |
taaacacaatatttggaaacacttcacttattgatattatttataaataaatttacaaataggaatacatctacaatgaaattttctctcagcctctgtg |
1430192 |
T |
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