View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075_high_8 (Length: 310)
Name: NF0075_high_8
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075_high_8 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: scaffold0470 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 961 - 700
Alignment:
| Q |
1 |
tggagacacaggggatagaaagtcgattgttggctacctattcttctatgatggagcaccaatatcgtggaacaaataataaattacaagtgagtg---a |
97 |
Q |
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| T |
961 |
tggagacacgggggatagaaagtcgattgttggctacatattcttctatgatggagcatcaatatcgtggaacaaataacaaattacaagtgagtgatga |
862 |
T |
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| Q |
98 |
tgagtacatgtgccctaaatttatgacccatgttaaggaacttaatataaatatttcattagtaagacnnnnnnnnggttaggaaacatgagtacactaa |
197 |
Q |
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| T |
861 |
tgagtacatgtgccctaagtttatgacccatgttgaggaacttaatataaaaatttcattagtaagac-aaaaaaaggttaggaaacatgagtacactaa |
763 |
T |
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| Q |
198 |
aagact-agtctaaacttctgaaatttcattagtaagacaacaaaaaatggttacccatatcc |
259 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
762 |
aagactaagtctaaacttctgaaatttcattagtaagacaacaaaaaatggttactcatatcc |
700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 6611673 - 6611412
Alignment:
| Q |
1 |
tggagacacaggggatagaaagtcgattgttggctacctattcttctatgatggagcaccaatatcgtggaacaaataataaattacaagtgagtg---a |
97 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| | |
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| T |
6611673 |
tggagacacgggggatagaaagtcgattgttggctacatattcttctatgatggagcatcaatatcgtggaacaaataacaaattacaagtgagtgatga |
6611574 |
T |
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| Q |
98 |
tgagtacatgtgccctaaatttatgacccatgttaaggaacttaatataaatatttcattagtaagacnnnnnnnnggttaggaaacatgagtacactaa |
197 |
Q |
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| T |
6611573 |
tgagtacatgtgccctaagtttatgacccatgttgaggaacttaatataaaaatttcattagtaagac-aaaaaaaggttaggaaacatgagtacactaa |
6611475 |
T |
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| Q |
198 |
aagact-agtctaaacttctgaaatttcattagtaagacaacaaaaaatggttacccatatcc |
259 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6611474 |
aagactaagtctaaacttctgaaatttcattagtaagacaacaaaaaatggttactcatatcc |
6611412 |
T |
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