View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075_low_1 (Length: 539)
Name: NF0075_low_1
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 7e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 240 - 401
Target Start/End: Complemental strand, 12867161 - 12867000
Alignment:
| Q |
240 |
ccaaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttc |
339 |
Q |
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| T |
12867161 |
ccaaccattgtccacatccttaaaattatgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcttctggattgtttttc |
12867062 |
T |
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| Q |
340 |
atcttcttagaaactccagaatctggtgatgaagattttggccttttacctcgccgtgatga |
401 |
Q |
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| T |
12867061 |
atcttcttagaaactccagaagacggtgatgaagattttggccttttacctcgccgtgatga |
12867000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 12867403 - 12867255
Alignment:
| Q |
1 |
ctcttttaatgtatgtcatttggatcacacacacgaagaagttcttatcagaataaaacttgttcttgactttatcatacaaaacttggcttcgctcctt |
100 |
Q |
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| T |
12867403 |
ctcttttaatgtatgtcatttggatcacacac--gaagaagttcttatcagaatgaaacttgttcttcactttatcatacaaaacttggcttcgctcctt |
12867306 |
T |
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| Q |
101 |
aagatcatc------accactaattcctcctaagaaattgagtaattcacc |
145 |
Q |
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| T |
12867305 |
aagatcatcacaactacaactagttcctgctaagaaattgagtaattcacc |
12867255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 242 - 353
Target Start/End: Complemental strand, 15134395 - 15134284
Alignment:
| Q |
242 |
aaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttcat |
341 |
Q |
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|
||||||||| || ||||||||||||| ||||| |||| || | ||||| | || |||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
15134395 |
aaccattgttcatatccttaaaattatgaaattttgcttgagattggaatattttcttctcatgcttagattctttttgttcctctgggttgattttcat |
15134296 |
T |
|
| Q |
342 |
cttcttagaaac |
353 |
Q |
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||||||| |||| |
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| T |
15134295 |
cttcttacaaac |
15134284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 344
Target Start/End: Complemental strand, 49743020 - 49742916
Alignment:
| Q |
240 |
ccaaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttc |
339 |
Q |
| |
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||||||||||||| |||||| || ||| |||| ||| | ||| ||||||||||||||||||||||||||| |||||||||||| | || ||| ||||| |
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| T |
49743020 |
ccaaccattgtccgtatccttgaagttaagaaaccttccttgttcttggacttttctcttctcatgcttaggttctttttgttcttttgaattgattttc |
49742921 |
T |
|
| Q |
340 |
atctt |
344 |
Q |
| |
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||||| |
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| T |
49742920 |
atctt |
49742916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 49743250 - 49743134
Alignment:
| Q |
6 |
ttaatgtatgtcatttggatcacacacacgaagaagttcttatcagaataaaacttgttcttgactttatcatacaaaacttggcttcgctccttaagat |
105 |
Q |
| |
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|||||||||||| ||||||||| ||||| |||||| | | |||||| | || ||||| ||||| || |||||||||| ||||| ||||||||||| |
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| T |
49743250 |
ttaatgtatgtcttttggatcatacacatgaagaaatccatatcagcgtggaaaaaattcttcactttgtcgtacaaaactttgcttctctccttaagat |
49743151 |
T |
|
| Q |
106 |
catcaccactaattcct |
122 |
Q |
| |
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|||||| |||| ||||| |
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|
| T |
49743150 |
catcacaactacttcct |
49743134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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