View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075_low_10 (Length: 344)
Name: NF0075_low_10
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075_low_10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 176 - 344
Target Start/End: Original strand, 33989934 - 33990090
Alignment:
| Q |
176 |
gagttacaaaacaaattaaagtgtagaaagcaccgatcacaaatgagacaagagatgacagcaaagaaaaggacagttgcattacataattattataacc |
275 |
Q |
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| T |
33989934 |
gagttacaaaacaaattaaagtgtagaaagcaccgatcacaaatgagacaagagatgacagcaaagaaaaggacagttgcattacataattattataacc |
33990033 |
T |
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| Q |
276 |
tgacagaaacagaaacagaaactgaaacagtatgcacgagaagagaaacagtagcatctcaagagggtc |
344 |
Q |
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| T |
33990034 |
tgacagaaaca------------gaaacagtatgcacgagaagagaaacagtagcatctcaagagggtc |
33990090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 33989819 - 33989848
Alignment:
| Q |
61 |
tattttaaagttatccaaacataaatcacg |
90 |
Q |
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| T |
33989819 |
tattttaaagttatccaaacataaatcacg |
33989848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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