View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075_low_12 (Length: 324)
Name: NF0075_low_12
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075_low_12 |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 1435 - 1627
Alignment:
| Q |
10 |
tttccccaatttatttaaggtttcagatcttgttcatttctcgatgatagtgacgacgcggtcgttgtgccaagataagtacaagggagattctatagtt |
109 |
Q |
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| T |
1435 |
tttccccaatttatttaaggtttcagatcttgttcatttctcggtgatagtgacgacgcggtcgtcgtgccaagataagtacaagggagattctatagtt |
1534 |
T |
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| Q |
110 |
cagatgattttcgatgattctttgtccattaatggccacactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatggttctct |
202 |
Q |
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| T |
1535 |
cagatgattttcgatgattctttgtccattaatggccgcactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatggttctct |
1627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 8037 - 8229
Alignment:
| Q |
10 |
tttccccaatttatttaaggtttcagatcttgttcatttctcgatgatagtgacgacgcggtcgttgtgccaagataagtacaagggagattctatagtt |
109 |
Q |
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| T |
8037 |
tttccccaatttatttaaggtttcagatcttgttcatttctcggtgatagtgacgacgcggtcgtcgtgccaagataagtacaagggagattctatagtt |
8136 |
T |
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| Q |
110 |
cagatgattttcgatgattctttgtccattaatggccacactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatggttctct |
202 |
Q |
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| T |
8137 |
cagatgattttcgatgattctttgtccattaatggccgcactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatggttctct |
8229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 17059513 - 17059713
Alignment:
| Q |
2 |
tgtcccaatttccccaatttatttaaggtttcagatcttgttcatttctcgatgatagtgacgacgcggtcgttgtgccaagataagtacaagggagatt |
101 |
Q |
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| T |
17059513 |
tgtcccagtttccccaatttatttaaggtttcagatcttgttcatttctcggtgata-tgcatagggggtcgttgtgccaagataagtacaagggagatt |
17059611 |
T |
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| Q |
102 |
ctatagttcagatgattttcgatgattctttgtccattaatggccacactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatggttctc |
201 |
Q |
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| T |
17059612 |
ctatagttcagatgattttcgatgattctttgtccattaatggccacactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatggttctc |
17059711 |
T |
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| Q |
202 |
tg |
203 |
Q |
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|| |
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| T |
17059712 |
tg |
17059713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 5523820 - 5523897
Alignment:
| Q |
74 |
ttgtgccaagataagtacaagggagattctatagttcagatgattttcgatgattctttgtccattaatggccacact |
151 |
Q |
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| T |
5523820 |
ttgtgccaagataagtacaatggagattctatagttcagatgattttttatgattctttgtccattaatggccgcact |
5523897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 38289406 - 38289499
Alignment:
| Q |
102 |
ctatagttcagatgattttcgatgattctttgtccattaatggccacactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatg |
195 |
Q |
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| T |
38289406 |
ctatagttcagaaaatttccggtgattctttatccattaatggccacacctttacgtttgattccgttgccgacgtcgaagctactcaggtatg |
38289499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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