View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075_low_2 (Length: 539)
Name: NF0075_low_2
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 12867379 - 12867769
Alignment:
| Q |
1 |
atccaaatgacatacattaaaagagatcttatggtaacaaaatattttatttgatcacttttattggtaatatagaaataaaataaaatattt--tgtgt |
98 |
Q |
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| T |
12867379 |
atccaaatgacatacattaaaagagatcttatggtaacaaaatattttatttgatcacttttattggtaatatagaaataaaataaaatattttatgtgt |
12867478 |
T |
|
| Q |
99 |
atgtgataaaattttgagttaactctcaatatcaattccttaacgagattaattgtta-----taatcgtgatattcttaattatacgtacgtgtgtgaa |
193 |
Q |
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| T |
12867479 |
atgtgataaaattttgagttaactctcaatatcaattccttaacgagattaattgttatgtactaatggtgatattcttaatt----ttacgtgtgtgag |
12867574 |
T |
|
| Q |
194 |
ttgaaagttagaaattgcattcatttagcttttttatttattctaagatgtattactgattttttaatgtgaaaaccaataatccaacacagggtatacc |
293 |
Q |
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| T |
12867575 |
ttgaaagttagaaattgcattcatttagcttttttatttattctaagatgtattactgattttttaatgtgaaaaccaataatccaacacagggtatacc |
12867674 |
T |
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| Q |
294 |
atttgaatttgccaagaaatatctgcataggatgaaaggaagaaaggttactctttttgttgatcaaaacaaaacatggaatgttgattttaatatcact |
393 |
Q |
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| T |
12867675 |
atttgaa------agtaaatttattc-taggatgaaaggaagaaaggttactctttttgttgatcaaaacaaaacatggaatgttgattttaatatcact |
12867767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 185 - 394
Target Start/End: Original strand, 49743871 - 49744081
Alignment:
| Q |
185 |
gtgtgtgaattgaaagttagaaattgcattcatttagcttttt--tatttattctaagatgtattactgattttttaatgtgaaaaccaataatccaaca |
282 |
Q |
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| T |
49743871 |
gtgtgtgcattgaaagttagaaattgcatccatttagccttttagtatttattctgagttgtattgctgatattttaatgtataaac-aatgatctaaaa |
49743969 |
T |
|
| Q |
283 |
cagggtataccatttgaatttgccaagaaatatctgcataggatgaaaggaagaaaggttactctttttgttgatcaaaacaaaacatggaatgttgatt |
382 |
Q |
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|||| |||||| |||||||||| |||||| ||||||| |||||| |||||||||| |||||||||||||||||||| ||| | ||||||||| ||||| |
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| T |
49743970 |
tagggcataccaattgaatttgctaagaaacatctgcacaggatggaaggaagaaatattactctttttgttgatcaagacagaccatggaatgctgatt |
49744069 |
T |
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| Q |
383 |
ttaatatcactt |
394 |
Q |
| |
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| ||| |||||| |
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| T |
49744070 |
tgaatctcactt |
49744081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 49743231 - 49743292
Alignment:
| Q |
1 |
atccaaatgacatacattaaaagagatcttatggtaacaaaatattttatttgatcactttt |
62 |
Q |
| |
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||||||| |||||||||||| | |||| | ||||||||||| ||||||||||||||||||| |
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|
| T |
49743231 |
atccaaaagacatacattaagaaagatgtcttggtaacaaaacattttatttgatcactttt |
49743292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 15134613 - 15134662
Alignment:
| Q |
9 |
gacatacattaaaagagatcttatggtaacaaaatattttatttgatcac |
58 |
Q |
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| T |
15134613 |
gacacacattgagagagatcttttggtaacaaactattttatttgatcac |
15134662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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