View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0075_low_20 (Length: 237)

Name: NF0075_low_20
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0075_low_20
NF0075_low_20
[»] chr1 (2 HSPs)
chr1 (38-133)||(20101560-20101655)
chr1 (152-211)||(11930617-11930676)
[»] chr3 (3 HSPs)
chr3 (133-222)||(14603900-14603988)
chr3 (133-217)||(2701722-2701805)
chr3 (53-86)||(43363478-43363511)
[»] chr4 (5 HSPs)
chr4 (133-217)||(18001018-18001101)
chr4 (152-217)||(41851612-41851677)
chr4 (133-217)||(29967830-29967913)
chr4 (172-217)||(2479777-2479822)
chr4 (46-86)||(52701463-52701503)
[»] chr2 (2 HSPs)
chr2 (133-217)||(20640546-20640629)
chr2 (46-128)||(18071749-18071825)
[»] chr7 (3 HSPs)
chr7 (152-217)||(11642832-11642897)
chr7 (152-217)||(45286040-45286105)
chr7 (152-217)||(45419066-45419131)
[»] chr8 (2 HSPs)
chr8 (158-211)||(30437562-30437615)
chr8 (152-217)||(1199127-1199192)
[»] chr5 (4 HSPs)
chr5 (152-217)||(14164951-14165016)
chr5 (152-217)||(7781807-7781872)
chr5 (152-217)||(19122773-19122838)
chr5 (46-133)||(38628380-38628468)
[»] chr6 (1 HSPs)
chr6 (152-217)||(8561055-8561120)


Alignment Details
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 20101655 - 20101560
Alignment:
Q  38 tattgtaatgtaatataagaaaattaaaataaaaagaccactttgaacannnnnnnnacagaaattgaatgtgcatttatagaaaaaatatatacc 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  20101655 tattgtaatgtaatataagaaaattaaaataaaaagaccactttgaacattttttttacagaaattgaatgtgcatttatagaaaaaatatatacc 20101560  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 11930617 - 11930676
Alignment:
Q  152 gaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattga 211  Q
    ||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  11930617 gaaggtttaattgagttatgattcacatattcagcgtaacttaaacggtgatcatattga 11930676  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 14603900 - 14603988
Alignment:
Q  133 catggttcctcgtgaggaggaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgtccatc 222  Q
    |||||||||  |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  14603900 catggttccaagtgaggag-aaggtttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgacgatgttcatc 14603988  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 2701722 - 2701805
Alignment:
Q  133 catggttcctcgtgaggaggaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    |||||||||  |||||||| |||  ||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||    
T  2701722 catggttccaggtgaggag-aagctttatttgagttatgattcacctattcatcgtaacagaaacggtgatcatattgacgatgt 2701805  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 43363478 - 43363511
Alignment:
Q  53 taagaaaattaaaataaaaagaccactttgaaca 86  Q
    ||||||||||||||||||||||||||||| ||||    
T  43363478 taagaaaattaaaataaaaagaccactttaaaca 43363511  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 18001101 - 18001018
Alignment:
Q  133 catggttcctcgtgaggaggaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    |||||||||  |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18001101 catggttccaggtgaggag-aaggtttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgacgatgt 18001018  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 41851677 - 41851612
Alignment:
Q  152 gaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  41851677 gaaggtttatttgagttatgcttcacctattcatcgtaacttaaacggtgatcatattgacgatgt 41851612  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 29967830 - 29967913
Alignment:
Q  133 catggttcctcgtgaggaggaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    |||||||||  |||||||| |||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  29967830 catggttccaggtgaggag-aaggtttatttgagttatgattcacctattcattataacttaaacggtgatcatattgacgatgt 29967913  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 2479822 - 2479777
Alignment:
Q  172 attcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  2479822 attcacctattcatcgtaacttaaacggtgatcatattgacgatgt 2479777  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 52701463 - 52701503
Alignment:
Q  46 tgtaatataagaaaattaaaataaaaagaccactttgaaca 86  Q
    |||||| |||||||||||||||||||||| | |||||||||    
T  52701463 tgtaatttaagaaaattaaaataaaaagatcgctttgaaca 52701503  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 20640629 - 20640546
Alignment:
Q  133 catggttcctcgtgaggaggaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    |||||||||  |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20640629 catggttccaggtgaggag-aaggtttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgacgatgt 20640546  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 18071825 - 18071749
Alignment:
Q  46 tgtaatataagaaaattaaaataaaaagaccactttgaacannnnnnnnacagaaattgaatgtgcatttatagaaaaaatat 128  Q
    |||||| |||||||||||||||||||||||| ||||||| |        ||||||||||||||||||||||||||||||||||    
T  18071825 tgtaatttaagaaaattaaaataaaaagaccgctttgaatatg------acagaaattgaatgtgcatttatagaaaaaatat 18071749  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 11642897 - 11642832
Alignment:
Q  152 gaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11642897 gaaggtttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgacgatgt 11642832  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 45286040 - 45286105
Alignment:
Q  152 gaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  45286040 gaaggtttatttgagttatgattcacctattcattgtaacttaaacggtgatcatattgacgatgt 45286105  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 45419131 - 45419066
Alignment:
Q  152 gaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||    
T  45419131 gaaggtttatttgagttatgattcacccattcatcgcaacttaaatggtgatcatattgacgatgt 45419066  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 30437615 - 30437562
Alignment:
Q  158 ttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30437615 ttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattga 30437562  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 1199127 - 1199192
Alignment:
Q  152 gaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||||    
T  1199127 gaaggtttatttgaattatgattcacctattcatcataacttaaatggtgatcatattgacgatgt 1199192  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 14165016 - 14164951
Alignment:
Q  152 gaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  14165016 gaaggtttatttgagttatgattcacctattcatcgtaacttaaacgatgatcatattgacgatgt 14164951  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 7781807 - 7781872
Alignment:
Q  152 gaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    ||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  7781807 gaaggtttatttgagttatgattcacctatttagcgtaacttaaacggtgatcatattgacgatgt 7781872  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 19122773 - 19122838
Alignment:
Q  152 gaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||    
T  19122773 gaaggtttatttgagttatgattcacctatttatcgtaacttaaccggtgatcatattgacgatgt 19122838  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 38628380 - 38628468
Alignment:
Q  46 tgtaatataagaaaattaaaataaaaagaccactttgaaca-nnnnnnnnacagaaattgaatgtgcatttatagaaaaaatatatacc 133  Q
    |||||| |||||||||||||||||||||||| |||||||||          |||||||||||||||||| |||||||||||||| ||||    
T  38628380 tgtaatttaagaaaattaaaataaaaagaccgctttgaacatttcttttggcagaaattgaatgtgcatatatagaaaaaatatttacc 38628468  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 8561120 - 8561055
Alignment:
Q  152 gaaggcttatttgagttatgattcacctattcatcgtaacttaaacggtgatcatattgatgatgt 217  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  8561120 gaaggtttacttgagttatgattcacctattcagcgtaacttaaacggtgatcatattgacgatgt 8561055  T

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