View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075_low_3 (Length: 507)
Name: NF0075_low_3
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 42 - 501
Target Start/End: Complemental strand, 19107051 - 19106589
Alignment:
| Q |
42 |
caattctcatgtttaagagagaga--taggtgataccaaataaataccaattccaaatccagtaaatgtctttaagaacataaaatgtgttctctttaag |
139 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19107051 |
caattctcatgtttaagagagagagataggtgataccaaataaataccaattccatatccagtaaatatctttaagaacataaaatgtgttctctttaag |
19106952 |
T |
|
| Q |
140 |
aacgtaatagaataaa-ttcactttctatcagcaatgttaacagtactgttaatagtgatgtttaatacaatcacaaacccctaattgcaagccatttct |
238 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
19106951 |
aacgtaatagaataaaattcactttctatcagcaatgttaacagtactattaatagtgatgtttaatgcaatcacaaacccttaattgcaagccatttct |
19106852 |
T |
|
| Q |
239 |
ttgctttccagttcaaccttacgaatatgttcgtccatgttcaccacagcctcaccaccatcacctttcatccgcttcagtggaggattcaaatcaacct |
338 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19106851 |
ttgctttccagttcagccttacgaatatgttcgtccatgttcaccacagcctcgccaccatcacctttcatccgcttcagtggaggattcaaatcaacct |
19106752 |
T |
|
| Q |
339 |
cgttaacttctttcaagacttcttcacttgaatcacagggtttcgaaacttttgtcttctcatccaacttggtattttcactgcctttagcacttgattc |
438 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19106751 |
cgttaacttctttcaagacttcttcacttgaatcgcagggtttcgaaacttttgtcttctcatccaacttggtattttcactgcctttagcacttgattc |
19106652 |
T |
|
| Q |
439 |
ttcaaaactatcctccatctaatcagcctgtagctggagtgattctatgacacccatcatttc |
501 |
Q |
| |
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| T |
19106651 |
ttcaaaactatcctccatctaatcagcctgtagctggagtgattctatgacacccatcatttc |
19106589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 262 - 501
Target Start/End: Complemental strand, 43197035 - 43196796
Alignment:
| Q |
262 |
aatatgttcgtccatgttcaccacagcctcaccaccatcacctttcatccgcttcagtggaggattcaaatcaacctcgttaacttctttcaagacttct |
361 |
Q |
| |
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||||||||| ||| ||||| ||||||||| |||||| ||||||| |||||||| |||||||||||| |||| || ||||| ||| |||||||||| | |
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| T |
43197035 |
aatatgttcctccgtgttcgccacagccttgccaccagtacctttcctccgcttctgtggaggattcagatcattcttgttaatttccttcaagactttt |
43196936 |
T |
|
| Q |
362 |
tcacttgaatcacagggtttcgaaacttttgtcttctcatccaacttggtattttcactgcctttagcacttgattcttcaaaactatcctccatctaat |
461 |
Q |
| |
|
||||||||||||||||| || ||||| | |||| ||||||| |||| ||||||| | ||| |||||||||||||| |||| |||||||||| | |
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| T |
43196935 |
tcacttgaatcacagggctttgaaacctccgtctcctcatccggcttgagattttcatcactttttacacttgattcttcagaactctcctccatctgtt |
43196836 |
T |
|
| Q |
462 |
cagcctgtagctggagtgattctatgacacccatcatttc |
501 |
Q |
| |
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|
| T |
43196835 |
cagcctgttgctggagtgattctatgacacccatcatttc |
43196796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 53673338 - 53673287
Alignment:
| Q |
278 |
ttcaccacagcctcaccaccatcacctttcatccgcttcagtggaggattca |
329 |
Q |
| |
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|||| |||||||| |||||| |||||||| ||||||||||||||||||||| |
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| T |
53673338 |
ttcatcacagccttgccaccagcacctttcgtccgcttcagtggaggattca |
53673287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 43190621 - 43190697
Alignment:
| Q |
297 |
catcacctttcatccgcttcagtggaggattcaaatcaacctcgttaacttctttcaagacttcttcacttgaatca |
373 |
Q |
| |
|
||||||||||| || |||| |||||||||||| |||| ||||||||| ||| | || ||||| |||||| |||||| |
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| T |
43190621 |
catcacctttcctcttcttctgtggaggattcacatcatcctcgttaatttcctccacgactttttcactcgaatca |
43190697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 501
Target Start/End: Original strand, 43190797 - 43190837
Alignment:
| Q |
461 |
tcagcctgtagctggagtgattctatgacacccatcatttc |
501 |
Q |
| |
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||||||||| ||||||||| |||||| |||||||||||||| |
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| T |
43190797 |
tcagcctgtcgctggagtgtttctatcacacccatcatttc |
43190837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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