View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075_low_6 (Length: 434)
Name: NF0075_low_6
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 38875696 - 38876083
Alignment:
| Q |
19 |
tcatcaaggtgaagagtttaatttcctacaggcttgtcatggtcaatacttcctaacaggttgtgtatggtagcggttaaattcccgatcaatgtcccac |
118 |
Q |
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| T |
38875696 |
tcatcaaggtgaagagtttaatttcctacaggcttgtcatggtcaatacttcctaacaggttgtgtatggtagcggttaaattcccgatcaatgtcccac |
38875795 |
T |
|
| Q |
119 |
tcttctacatgaaaatttgatattttcaatcaaagattccttttcaaggttttagtctcctgaaataattttctcgggaatgatacctgtccctaatgaa |
218 |
Q |
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| T |
38875796 |
tcttctacatgaaagtttgatattttcaatcaaagattccttttcaaggttttagtctcctgaaataattttctcgggaatgatacctgtccctaatgaa |
38875895 |
T |
|
| Q |
219 |
ttataatctgaaggcataccttgggagatttattttacaactaagaagagttgttgatcgattaaatttggtgtgcttagaattttgaaaaatctgaagt |
318 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38875896 |
ttataatctgaaggcataccttgggggatttattttacaactaagaagagttgttgatcgattaaatttggtgtgcttagaattttgaaaaatctgtagt |
38875995 |
T |
|
| Q |
319 |
taaacaacaattcaactgtgaaatcatacattgataagggatgtaactaaatgtatgcaaatcaatccaaatgcagtacaatatgttt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38875996 |
taaacaacaattcaactgtgaaatcatacattgataagggatgtaactaaatgtatgcaaatcaatccaaatgcagtacaatatgttt |
38876083 |
T |
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