View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0075_low_8 (Length: 368)
Name: NF0075_low_8
Description: NF0075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0075_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 194 - 357
Target Start/End: Original strand, 14223430 - 14223593
Alignment:
| Q |
194 |
ttgtaaaattttatattttgaatgaaaacatagactgcaaatccttttcttttgatcaattggatttgggctcttatatctatattaaatagggtaaaac |
293 |
Q |
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| T |
14223430 |
ttgtaaaattttatattttgaatgaaaacatagactgcaattccttttcttttgatcaattggagttgggctcttaaatctatattaaatagggtaaaac |
14223529 |
T |
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| Q |
294 |
atttctagtcaatgttgcagacggctccgtagaatttgtactttgacaaatttatttggtctgt |
357 |
Q |
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| T |
14223530 |
atttctagtcaatgttgcagacggctccgtagaatttgtactttgacaaatttatttggtctgt |
14223593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 14227927 - 14228004
Alignment:
| Q |
127 |
cttgtattcttttggcctagtttattcatacctaatcaggactattcaaagcttgtattgaagcaccttgtaaaattt |
204 |
Q |
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| T |
14227927 |
cttgtattcttttggcctcgtttattcgtttttaatcaggactggtctaagctagttttgaagctccttgtcaaattt |
14228004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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