View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0076-INSERTION-2 (Length: 601)
Name: NF0076-INSERTION-2
Description: NF0076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0076-INSERTION-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Complemental strand, 43534098 - 43533502
Alignment:
| Q |
1 |
ggaatcctatccagtattgaaatactggtagtttttctttttatagtcttcttggcatggacttactatgcacgtatttccaatgatttcaaaaagttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43534098 |
ggaatcctatccagtattgaaatactggtagtttttctttttatagtcttcttggcatggacttactatgcacgtatttccaatgatttcaaaaagttga |
43533999 |
T |
|
| Q |
101 |
tgcaagacaaatcactgaaactgaacatgtaagcgttctttgatcaagatattatttatgtttgatgattgaaaagctgttatttcactaattgcatgca |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533998 |
tgcaagacaaatcactgaaactgaacatgtaagtgttctttgatcaagatattatttatgtttgatgattgaaaagctgttatttcactaattgcatgca |
43533899 |
T |
|
| Q |
201 |
tgcaacataacttaattttcagatggcaacttaagtctcttagaatagcaacaaggtttggtttgctagcagaagcttgtttgactttgcttcttcttcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43533898 |
----acataacttaattttcagatggcaacttaagtctcttagaatagcaacaaggtttggtttgctagcagaagcttgtttggctttgcttcttcttcc |
43533803 |
T |
|
| Q |
301 |
aattttaagagggttggctatatttcgcatatttggtattcaatttgaagcttcagttaagtatcatacatggattggaactgctatgatacttttcgct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533802 |
aattttaagagggttggctatatttcgcatatttggtattcaatttgaagcttcagttaagtatcatacatggattggaactgctatgatacttttcgct |
43533703 |
T |
|
| Q |
401 |
acaatacatggcgccagcactttgtttgtctggggtgtcagccaccatatacaaagcgaggtgaggtctattccctatttggataaacaacttcgttaag |
500 |
Q |
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| T |
43533702 |
acaatacatggcgccagcactttgtttgtctggggtgtcagccaccatatacaaagcgaggtgaggtctattccctatttggataaacaacttagttaag |
43533603 |
T |
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| Q |
501 |
cgcttacattaaaaacatttatcatataagtgcttactataagttatttctaaatcaaaaactaaaataaagttaaaatgtatccatatgagctataaat |
600 |
Q |
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| T |
43533602 |
cgcttacattaaaaacatttatcatataagtgcttactataagttatttctaaatcaaaaactaaaataaagttaaaatgtatccatatgagctataaat |
43533503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 475 - 581
Target Start/End: Original strand, 29699134 - 29699241
Alignment:
| Q |
475 |
ctatttggataaacaacttcgttaagcgcttacattaaaaacatttatcatataagtgctta-ctataagttatttctaaatcaaaaactaaaataaagt |
573 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||| | | ||| ||||||||||||| |||||| || |||||||||||| | ||||| ||||||||||| |
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| T |
29699134 |
ctatttggataaacgacttagttaagtgcttatagcataaatatttatcatataaatgcttatgtacaagttatttctataacaaaagataaaataaagt |
29699233 |
T |
|
| Q |
574 |
taaaatgt |
581 |
Q |
| |
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||||||| |
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| T |
29699234 |
caaaatgt |
29699241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 536
Target Start/End: Original strand, 7026609 - 7026672
Alignment:
| Q |
473 |
ccctatttggataaacaacttcgttaagcgcttacattaaaaacatttatcatataagtgctta |
536 |
Q |
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|||| |||||||||||||||| |||||| ||||| | |||||||||||||||||||||||| |
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| T |
7026609 |
ccctgtttggataaacaacttaattaagcatttacagcataaacatttatcatataagtgctta |
7026672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 552
Target Start/End: Original strand, 34563137 - 34563208
Alignment:
| Q |
482 |
gataaacaacttcgttaagcgcttacattaaaaacatttatcatataagtgctta-ctataagttatttcta |
552 |
Q |
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|||||||||||| |||| |||||| | | |||||||||||||||||||||||| ||||||||||||||| |
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| T |
34563137 |
gataaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttatatataagttatttcta |
34563208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 523 - 596
Target Start/End: Complemental strand, 49587057 - 49586984
Alignment:
| Q |
523 |
catataagtgcttactataagttatttctaaatcaaaaactaaaataaagttaaaatgtatccatatgagctat |
596 |
Q |
| |
|
||||||||||||||||||||| |||||||| | ||||| ||||||||||| ||| ||| | ||||| |||||| |
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| T |
49587057 |
catataagtgcttactataagctatttctataacaaaagataaaataaagtcaaactgttttcatataagctat |
49586984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 572
Target Start/End: Original strand, 991993 - 992048
Alignment:
| Q |
518 |
tttatcatataagtgcttac-tataagttatttctaaatcaaaaactaaaataaag |
572 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||| | |||||| |||||||||| |
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| T |
991993 |
tttatcatataagtgcttacgtataagttgtttctataacaaaaaataaaataaag |
992048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 536
Target Start/End: Complemental strand, 49365975 - 49365917
Alignment:
| Q |
478 |
tttggataaacaacttcgttaagcgcttacattaaaaacatttatcatataagtgctta |
536 |
Q |
| |
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|||||||||||||||| |||||||||||| | | |||| ||||| ||||||||||||| |
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| T |
49365975 |
tttggataaacaacttagttaagcgcttatagcataaacgtttataatataagtgctta |
49365917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 581
Target Start/End: Complemental strand, 41981835 - 41981791
Alignment:
| Q |
537 |
ctataagttatttctaaatcaaaaactaaaataaagttaaaatgt |
581 |
Q |
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|||||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
41981835 |
ctataagttatttctatatcaaaagataaaataaagttaatatgt |
41981791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 573
Target Start/End: Original strand, 40943829 - 40943888
Alignment:
| Q |
513 |
aaacatttatcatataagtgcttactataagttatttctaaatcaaaaactaaaataaagt |
573 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| || ||||| | |||||| ||||||||||| |
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| T |
40943829 |
aaacatttatcata-aagtgcttattataagctacttctataacaaaaaataaaataaagt |
40943888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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