View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0076-INSERTION-3 (Length: 575)
Name: NF0076-INSERTION-3
Description: NF0076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0076-INSERTION-3 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 563; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Original strand, 38816072 - 38816646
Alignment:
| Q |
1 |
cccaacaacagtaaaattaattttaaaaattacacttctataactaggtttacatttctatcttatccaattcccttcacagaatcacatgcacaattat |
100 |
Q |
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| T |
38816072 |
cccaacaacagtaaaattaattttaaaaattacacttctataactaggtttacatttctatcttatccaattcccttcacagaatcacatgcacaattat |
38816171 |
T |
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| Q |
101 |
cataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttc |
200 |
Q |
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| T |
38816172 |
cataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttc |
38816271 |
T |
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| Q |
201 |
tctaacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcgaaatctagacaaaatgtaaaac |
300 |
Q |
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| T |
38816272 |
tctaacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaac |
38816371 |
T |
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| Q |
301 |
cctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttcccacccacccaagcattcctccttcatctttagaagggcaaattga |
400 |
Q |
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| T |
38816372 |
cctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattga |
38816471 |
T |
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| Q |
401 |
atgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagca |
500 |
Q |
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| T |
38816472 |
atgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagca |
38816571 |
T |
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| Q |
501 |
ccgagacttcatattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatat |
575 |
Q |
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| T |
38816572 |
ccgagacttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatat |
38816646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 297 - 446
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
| Q |
297 |
aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttcccacccacccaagcattcctccttcatctttagaagggcaaa |
396 |
Q |
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| T |
38821782 |
aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca |
38821878 |
T |
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| Q |
397 |
ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca |
446 |
Q |
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| T |
38821879 |
ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca |
38821928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 555
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
| Q |
517 |
aaggtgtgtccagtgtccaacagatgtcagtctccaaca |
555 |
Q |
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| T |
35665559 |
aaggtgtgtccagtgtccaacacatgtcagtttccaaca |
35665597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 38821542 - 38821591
Alignment:
| Q |
11 |
gtaaaattaattttaaaaattacacttctataactaggtttacatttcta |
60 |
Q |
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| T |
38821542 |
gtaaaattaattttaaaaaaggcacttctataactaggtctatatttcta |
38821591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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