View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0076-INSERTION-4 (Length: 399)
Name: NF0076-INSERTION-4
Description: NF0076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0076-INSERTION-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 38489063 - 38488682
Alignment:
| Q |
1 |
gttttaatactataaataaattgattgatatacatatactgattggtagtaagagtaatattgaacattgacactgatgtatggttatatt-gaagtcca |
99 |
Q |
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| T |
38489063 |
gttttaatactataaataaattgattgatatacatatactgattggtagtaaga-----------------cactgatgtatggttatatttgaagtcca |
38488981 |
T |
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| Q |
100 |
cagcttttgtctgatattgaaacaaaacatgacaaaatgcaagccacgacatgatttaattatatgcagcttcaactagtggccacatgggatgcattca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38488980 |
cagcttttgtctgatattgaaacaaaacatgacaaaatgcaagccacgacatgatttaattatatgcagcttcaactagtggccacatgggatgcattca |
38488881 |
T |
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| Q |
200 |
aggagtaatctttccattcttctgattttgaaccaaagtttgagaattgctctatggtcccctcagtatgttcaaaagtcctttagatttaccggattgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38488880 |
aggagtaatctttccattcttctgattttgaaccaaagtttgagaattgctctatggtcccctcagtatgttcaaaagtcctttagatttaccggattgt |
38488781 |
T |
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| Q |
300 |
aacttccgatgacacaaaatctatctggagttacgacctgatcgttgnnnnnnnggatcggcttatttcagaggttcagcactccacgtggcgcatagag |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38488780 |
aacttccgatgacacaaaatctatctggagttacgacctgatcgttg-ttttttggatcggcttatttcagaggttcagcactccacgtggcgcatagag |
38488682 |
T |
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