View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0076_low_1 (Length: 367)
Name: NF0076_low_1
Description: NF0076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0076_low_1 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 29 - 356
Target Start/End: Original strand, 30272710 - 30273037
Alignment:
| Q |
29 |
atcttactcatggatgcatagtgtctcactatcatatttt-ggttctctgtgttgttgcttatgttaatttaatagttttgaacaacctattgtaattga |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30272710 |
atcttactcatggatgcatagtgtctcactatcatatttttggttctctgtgttgttgcttatgttaatttaatagttttgaacaacctattgtaattga |
30272809 |
T |
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| Q |
128 |
tagttttgtaataaaacaacactttcatttgtgtgtatagaataattagaaaatatgtcctgtagtctataatgccataggaaggaggtagaagaatcat |
227 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30272810 |
tagttttgtgataaaacaacactttcatttgtgtgtatagaataattagaaaatatgtcctatagtctataatgccataggaaggaggtagaagaatcat |
30272909 |
T |
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| Q |
228 |
caggaagattacaatgaagaaggacataagagagggagagagccatagggaggacccttgaaattgtttattgtttcaagtggtttcttccaaattgata |
327 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| |
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| T |
30272910 |
caggaagattacaatgaagaaggacat-agagagggagagagccatagggaggaccctcgaaattgtttgttgtttcaattggtttcttccaaattgata |
30273008 |
T |
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| Q |
328 |
atttcagtttctttgttctgcaccttcat |
356 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
30273009 |
atttcagtttctttgttctgcaccttcat |
30273037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 4770 - 4547
Alignment:
| Q |
29 |
atcttactcatggatgcatagtgtctcactatcatatttt-ggttctctgtgttgttgcttatgttaatttaatagttttgaacaacctattgtaattga |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4770 |
atcttactcatggatgcatagtgtctcactatcatatttttggttctctgtgttgttgctaatgttaatttaatagttttgaacaacctattgtaattga |
4671 |
T |
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| Q |
128 |
tagttttgtaataaaacaacactttcatttgtgtgtatagaataattagaaaatatgtcctgtagtctataatgccataggaaggaggtagaagaatcat |
227 |
Q |
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|||||||||| |||||||||||||| | ||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||||||| |||||||| |
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| T |
4670 |
tagttttgtattaaaacaacacttttaattgtgtgtatagaataattag-aaatatgtactatagtctaaaatgccataggaaggaggtagtagaatcat |
4572 |
T |
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| Q |
228 |
caggaagattacaatgaagaaggac |
252 |
Q |
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|||||| ||||||||||||| |||| |
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| T |
4571 |
caggaaaattacaatgaagagggac |
4547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 344
Target Start/End: Original strand, 12089163 - 12089193
Alignment:
| Q |
314 |
cttccaaattgataatttcagtttctttgtt |
344 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
12089163 |
cttccaaattgataatttcagtttctttgtt |
12089193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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