View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0076_low_3 (Length: 320)
Name: NF0076_low_3
Description: NF0076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0076_low_3 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 53 - 310
Target Start/End: Original strand, 41697787 - 41698044
Alignment:
| Q |
53 |
tgtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgcccccaccatccaatttcctttttatattannnnnnngatattaacatt |
152 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41697787 |
tgtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatattaacatt |
41697886 |
T |
|
| Q |
153 |
aaaatgaataaataaacaaatatatggcagagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcac |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697887 |
aaaatgaataaataaacaaatatatggcagagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcac |
41697986 |
T |
|
| Q |
253 |
cgttaccaacattcaccgccgttttcaaacttccttctccataaccttgttgtctctg |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697987 |
cgttaccaacattcaccgccgttttcaaacttccttctccataaccttgttgtctctg |
41698044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 53 - 310
Target Start/End: Original strand, 41703381 - 41703638
Alignment:
| Q |
53 |
tgtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgcccccaccatccaatttcctttttatattannnnnnngatattaacatt |
152 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41703381 |
tgtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatattaacatt |
41703480 |
T |
|
| Q |
153 |
aaaatgaataaataaacaaatatatggcagagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcac |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41703481 |
aaaatgaataaataaacaaatatatggcagagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcac |
41703580 |
T |
|
| Q |
253 |
cgttaccaacattcaccgccgttttcaaacttccttctccataaccttgttgtctctg |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41703581 |
cgttaccaacattcaccgccgttttcaaacttccttctccataaccttgttgtctctg |
41703638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 53 - 199
Target Start/End: Original strand, 8017229 - 8017375
Alignment:
| Q |
53 |
tgtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgcccccaccatccaatttcctttttatattannnnnnngatattaacatt |
152 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8017229 |
tgtgcaatatggtgcgacgagcaccacacgaattgcacgagagaatggcggaccccaccatccaatttcctttttatattatttttttgatattaacatt |
8017328 |
T |
|
| Q |
153 |
aaaatgaataaataaacaaatatatggcagagacaatcacggcacac |
199 |
Q |
| |
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|||||||||||||||| || ||||||| ||||||||||||||||||| |
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|
| T |
8017329 |
aaaatgaataaataaataagtatatggaagagacaatcacggcacac |
8017375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 30272710 - 30272761
Alignment:
| Q |
6 |
atcttactcatggatgcatagtgtctcactatcata-ttttggttctctgtg |
56 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30272710 |
atcttactcatggatgcatagtgtctcactatcatatttttggttctctgtg |
30272761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 53 - 310
Target Start/End: Complemental strand, 54079163 - 54078906
Alignment:
| Q |
53 |
tgtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgcccccaccatccaatttcctttttatattannnnnnngatattaacatt |
152 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
54079163 |
tgtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatattaacatt |
54079064 |
T |
|
| Q |
153 |
aaaatgaataaataaacaaatatatggcagagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcac |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54079063 |
aaaatgaataaataaacaaatatatggcagagacaatcacgacacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcac |
54078964 |
T |
|
| Q |
253 |
cgttaccaacattcaccgccgttttcaaacttccttctccataaccttgttgtctctg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54078963 |
cgttaccaacattcaccgccgttttcaaacttccttctccataaccttgttgtctctg |
54078906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 183 - 310
Target Start/End: Original strand, 23556177 - 23556304
Alignment:
| Q |
183 |
agacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgttttcaaac |
282 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
23556177 |
agacaatcacggcacaaacttccttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccaccgtttttaaaa |
23556276 |
T |
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| Q |
283 |
ttccttctccataaccttgttgtctctg |
310 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
23556277 |
ttccttctccataaccttgttgtctctg |
23556304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 53 - 199
Target Start/End: Original strand, 23556018 - 23556165
Alignment:
| Q |
53 |
tgtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgcccccaccatccaatttcctttttatatta-nnnnnnngatattaacat |
151 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
23556018 |
tgtgctatatggtgcgacaagcaccacacgaattgcacgagagaatggctgaccccaccatccaatttcctttttatattatttttttttatattaacat |
23556117 |
T |
|
| Q |
152 |
taaaatgaataaataaacaaatatatggcagagacaatcacggcacac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
23556118 |
taaaatgaataaataaacaaatatatggaagagacaatcatggcacac |
23556165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 9842635 - 9842489
Alignment:
| Q |
53 |
tgtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgcccccaccatccaatttcctttttatattannnnnnngatattaacatt |
152 |
Q |
| |
|
|||| |||||||||| |||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
9842635 |
tgtgttatatggtgcaacaagcaccacatgaattgcacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgataataacatt |
9842536 |
T |
|
| Q |
153 |
aaaatgaataaataaacaaatatatggcagagacaatcacggcacac |
199 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
9842535 |
aaaatgaataaataaataaatatatggaagagacaatcacggcacac |
9842489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 9842476 - 9842386
Alignment:
| Q |
184 |
gacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgt |
274 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9842476 |
gacaatcactgcacaaacttccttctccataaccttatgttctgattttgttcaacaacacaaactcacagttaccaacattcaccgccgt |
9842386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 42434964 - 42434818
Alignment:
| Q |
53 |
tgtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgcccccaccatccaatttcctttttatattannnnnnngatattaacatt |
152 |
Q |
| |
|
||||||||||| |||||||||| | |||||||| |||||||||||| ||| || || |||||||||||||||||||||| |||||||||||| |
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|
| T |
42434964 |
tgtgctatatgatgcgacaagcaccgcacgaattgcacgagagaatgactgaccaaactatccaatttcctttttatattatttttttgatattaacatt |
42434865 |
T |
|
| Q |
153 |
aaaatgaataaataaacaaatatatggcagagacaatcacggcacac |
199 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
42434864 |
aaaatgaataaataaataaatatattgaagagacaatcacggcacac |
42434818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 42434805 - 42434708
Alignment:
| Q |
184 |
gacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgttttcaaa |
281 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
42434805 |
gacaatcactgcacaaacttctttctccataacattatgttctaattttgttcaacaacacaaactcaccattaccaacattcaccgccgttttcaaa |
42434708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 4770 - 4719
Alignment:
| Q |
6 |
atcttactcatggatgcatagtgtctcactatcata-ttttggttctctgtg |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4770 |
atcttactcatggatgcatagtgtctcactatcatatttttggttctctgtg |
4719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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