View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0076_low_5 (Length: 250)
Name: NF0076_low_5
Description: NF0076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0076_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 43984526 - 43984285
Alignment:
| Q |
1 |
tcgtatagaattctaagttggttggaagtttctgatcattgggaaaactcaattgagttcatttggtaaaactctgttgcatatattgtagcagtactat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43984526 |
tcgtatagaattctaagttggttgcaagtttctgatcattgggaaaactcaattgagttcatttggtaaaactctgttgcatatattgtaacagtactat |
43984427 |
T |
|
| Q |
101 |
catgcatgtgtatacttgtgtgctaatcaagtgtttggagctaattagcatgactcacaagtattgtaagttaagccatacttcatagtttattatagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984426 |
catgcatgtgtatacttgtgtgctaatcaagtgtttggagctaattagcatgactcacaagtattgtaagttaagccatacttcatagtttattatagct |
43984327 |
T |
|
| Q |
201 |
ctcggtgcnnnnnnnnttactaattttggtcattcctttgct |
242 |
Q |
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|
|||||||| |||||||||||||||||| ||||||| |
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| T |
43984326 |
ctcggtgcaaaaaaaattactaattttggtcatttctttgct |
43984285 |
T |
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