View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0077_high_1 (Length: 235)
Name: NF0077_high_1
Description: NF0077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0077_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 7746012 - 7746129
Alignment:
| Q |
1 |
acttatgaatacatgtgcatcaaagtaaaagtattctatttcaaaaaataaatagatagtacaatagaaatcagtaactagaaatgagtcaagagttata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7746012 |
acttatgaatacatgtgcatcaaagtaaaagtattctatttcaaaaaataaatagataatacaatagacatcagtaactagaaatgagtcaagagttata |
7746111 |
T |
|
| Q |
101 |
tctcctaatcttagttgt |
118 |
Q |
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|||||||||||||||||| |
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| T |
7746112 |
tctcctaatcttagttgt |
7746129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 17793461 - 17793543
Alignment:
| Q |
27 |
aaaagtattctatttcaaaaaataaatagatagtacaatagaaatcagtaactagaaatgagtcaagagttatatctcctaat |
109 |
Q |
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|||||||||||||||||||||||||||| || |||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
17793461 |
aaaagtattctatttcaaaaaataaatacatggtacaatagacattagtaactagaaatgagtcaagagttatatctcctaat |
17793543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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